Hg_chrom4_TN10mRNA_8253
Organism: Heterodera glycines Gene Locus: chr4:7013038-7016113 Feature type: polypeptideProtein Sequence
Length: 519
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 0.941 | 0.385 | 0.997 | 0.546 | 0.79 | 0.94 | 0.963 | 1.028 | 1.823 | 0.38 | 2.607 | 1.766 | 0.852 | 0.865 | 0.991 | 0.948 | 1.255 | 0.889 | 0.737 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7758
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.628
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.031
|
0.142
|
0.021
|
0.111
|
0.381
|
0.773
|
0.416
|
0.010
|
0.556
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008833
|
1.000
|
1.000
|
Hsc_gene_991.t1
|
Hsc_gene_991.t1
|
— | — |
KAI1724606.1 transmembrane amino acid transporter protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.850|GO:0110165_0.850|GO:0016020_0.808|GO:0008150_0.797|GO:0009987_0.744|GO:0003674_0.705|GO:0006810_0.698|GO:0051179_0.698|GO:0051234_0.698|GO:0055085_0.657|GO:0005622_0.633|GO:0005737_0.633|GO:0005215_0.604|GO:0022857_0.604|GO:0043226_0.593|GO:0043227_0.587|GO:0043229_0.571|GO:0043231_0.568|GO:0005773_0.544|GO:0071944_0.533|GO:0005886_0.519
|
IPR013057+37-399+
|
— |
PF01490+37-399+Transmembrane_amino_acid_transporter_protein
|
G3DSA:1.20.1740.10:FF:000052+33-457+Lysine_histidine_transporter-like_3
|
PTHR22950+40-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-519
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
56395.490
|
8.326
|
12.000
|
14.066
|
11.946
|
33.911
|
66.089
|
8.671
|
5.395
|
52.408
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1063.396
|
79.744
|
679.123
|
1225.839
|
2314.514
|
3585.389
|
1833.429
|
1334.851
|
430.492
|
184.657
|
290.015
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.861
|
3.805
|
0.961
|
0.885
|
0.646
|
-0.958
|
-1.531
|
0.600
|
— | — |
3.811
|
— | — |
No JSON data available for plots.