SCN Proteipedia

Hg_chrom4_TN10mRNA_8254

Organism: Heterodera glycines Gene Locus: chr4:7018584-7022581 Feature type: polypeptide

Protein Sequence

Length: 762

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.099	1.16	0.549	0.453	0.897	1.38	0.672	0.984	0.875	1.312	0.676	1.004	1.64	0.808	1.661	1.762	0.99	0.517	0.606	0.656	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7759	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.739

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	LGEV,RLRKRRQ,KRMTEFSTEEEKPEKKRDG,RKFSSSRLLRSVRDGRRPR	—	—	5-56	0.998	—	—	0.000	—	—	0.112	0.132	0.149	0.119	0.227	0.424	0.332	0.019	0.710	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008834	1.000	1.000	Hsc_gene_990.t2	Hsc_gene_990.t1;Hsc_gene_990.t2	—	O95279.1 Potassium channel subfamily K member 5 [Homo sapiens]	KAI1724607.1 ion channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.968\|GO:0009987_0.899\|GO:0051179_0.835\|GO:0006810_0.817\|GO:0051234_0.817\|GO:0003674_0.797\|GO:0005575_0.741\|GO:0110165_0.741\|GO:0016020_0.720\|GO:0055085_0.708\|GO:0006811_0.694\|GO:0034220_0.686\|GO:0006812_0.666\|GO:0030001_0.666\|GO:0098660_0.664\|GO:0005215_0.661\|GO:0005216_0.661\|GO:0015075_0.661\|GO:0015267_0.661\|GO:0022803_0.661\|GO:0022857_0.661\|GO:0098655_0.658\|GO:0098662_0.652\|GO:0005261_0.638\|GO:0008324_0.638\|GO:0006813_0.637\|GO:0071805_0.635\|GO:0015318_0.633\|GO:0022890_0.626\|GO:0046873_0.626\|GO:0071944_0.625\|GO:0005886_0.614\|GO:0005267_0.613\|GO:0015079_0.613\|GO:0032501_0.509	IPR003280+290-717_388-416_633-642+\|IPR013099+377-432_601-672+	—	PF07885+377-432_601-672+Ion_channel	—	PTHR11003+290-717+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-166;726-762	1.000	167-725	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.903	84758.710	10.386	39.500	22.966	10.892	51.706	48.294	14.567	8.399	50.394

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1122.852	2320.538	2225.765	1693.787	1030.810	1108.325	739.085	2355.082	482.140	248.350	348.546

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.290	-0.591	-0.285	-0.747	—	-0.576	0.985	-1.532	—	—	—	—	—

No JSON data available for plots.

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