Hg_chrom4_TN10mRNA_8255
Organism: Heterodera glycines Gene Locus: chr4:7023594-7024834 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 0.761 | 1.359 | 0.161 | 1.558 | 1.318 | 0.501 | 0.234 | 0.831 | 1.579 | 2.053 | 1.649 | 0.779 | 0.359 | 2.003 | 0.734 | 0.766 | 0.708 | 0.359 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7760
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRISKMDTQFDKIKKQ,KKAKKGFLTPERKKKLRKL,DRERKKAEVRKRLEEAGRAKKAKKGFLTPERKKKLRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.277
|
0.086
|
0.022
|
0.749
|
0.302
|
0.043
|
0.240
|
0.009
|
0.173
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008835
|
1.000
|
1.000
|
Hsc_gene_989.t1
|
Hsc_gene_989.t1
|
— |
O44572.2 Troponin I 4 [Caenorhabditis elegans]
|
KAI1724608.1 troponin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005861
|
GO:0005575_0.900|GO:0110165_0.897|GO:0005622_0.894|GO:0043226_0.845|GO:0043229_0.840|GO:0008150_0.811|GO:0005737_0.771|GO:0043228_0.746|GO:0043232_0.745|GO:0003674_0.600|GO:0005488_0.600|GO:0099080_0.540|GO:0005515_0.535|GO:0099081_0.516|GO:0099512_0.516
|
IPR001978+58-187+|IPR038077+43-212_52-190+|IPR050875+29-190+
|
— |
PF00992+58-187+Troponin
|
— |
PTHR13738+29-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;212-214
|
1.000
|
38-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
24895.740
|
10.498
|
14.500
|
40.654
|
5.140
|
58.879
|
41.121
|
23.832
|
16.822
|
38.785
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
659.582
|
932.496
|
1381.833
|
541.893
|
268.096
|
69.714
|
30.216
|
995.371
|
324.788
|
1059.723
|
744.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.338
|
-0.920
|
-1.242
|
-1.047
|
-1.929
|
-1.196
|
3.735
|
-4.901
|
— | — | — | — | — |
No JSON data available for plots.