Hg_chrom4_TN10mRNA_8256
Organism: Heterodera glycines Gene Locus: chr4:7025768-7036307 Feature type: polypeptideProtein Sequence
Length: 2,257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 0.927 | 0.701 | 0.688 | 2.009 | 0.704 | 0.839 | 0.886 | 0.975 | 1.341 | 0.752 | 1.668 | 1.551 | 0.69 | 1.908 | 0.791 | 0.734 | 0.94 | 1.568 | 0.599 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7761
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
LGEV,RRMKPTEERWKRERT,KKYGTEKRGGKGKKE,RKQSMRRHTLRRRGDR,KRRETERMLEERRQIR,KRKRMEEEEGGRRMKP,TEKRGGKGKKEAEEGK,KRTAEEEEEKGRRKKPW,RRDRERTEDEDERRMKP,RRNWGKGTEEEDERRMKP,KRRAEKRKNIWWRRLVRK,RRGRRWMEKRWRKRKKERG,RRDRGKWTEEEEEKRKTTK,RRQKRQHFAEEAEREARKR,KRQHFAEEAEREARKRGKP
|
29-49
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.073
|
0.113
|
0.020
|
0.158
|
0.219
|
0.253
|
0.114
|
0.004
|
0.913
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003882
|
1.000
|
2.000
|
Hsc_gene_988.t1;Hsc_gene_988.t2
|
— | — |
Q9P0X4.1 Voltage-dependent T-type calcium channel subunit alpha-1I [Homo sapiens]
|
QRX85588.1 voltage-dependent calcium channel T type alpha-1 [Heterodera elachista]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005245|GO:0005261|GO:0005886|GO:0005891|GO:0006811|GO:0016020|GO:0055085|GO:0070588
|
GO:0005575_0.953|GO:0110165_0.953|GO:0016020_0.939|GO:0005886_0.938|GO:0071944_0.938|GO:0008150_0.918|GO:0009987_0.882|GO:0051179_0.878|GO:0051234_0.870|GO:0006810_0.869|GO:0003674_0.802|GO:0005215_0.793|GO:0005216_0.793|GO:0006811_0.793|GO:0015075_0.793|GO:0015267_0.793|GO:0022803_0.793|GO:0022857_0.793|GO:0034220_0.793|GO:0055085_0.793|GO:0005261_0.750|GO:0006812_0.750|GO:0008324_0.750|GO:0098655_0.750|GO:0022836_0.747|GO:0065007_0.744|GO:0030001_0.742|GO:0098660_0.717|GO:0098662_0.682|GO:0015318_0.670|GO:0022890_0.659|GO:0046873_0.659|GO:0006816_0.643|GO:0022832_0.643|GO:0005244_0.642|GO:0022843_0.636|GO:0070588_0.624|GO:0005262_0.590|GO:0015085_0.590|GO:0050789_0.587|GO:0005245_0.573|GO:0050896_0.534
|
IPR002077+806-832_1613-1625+|IPR005821+153-494_643-876_1420-1692_1752-2007+|IPR027359+146-271_632-750_1412-1546_1746-1874+|IPR043203+87-2049+
|
— |
PF00520+153-494_643-876_1420-1692_1752-2007+Ion_transport_protein
|
G3DSA:1.10.287.70:FF:000120+1873-2032+Voltage-dependent_T-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000125+754-908+Voltage-dependent_T-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000206+1547-1730+Voltage-dependent_T-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000007+632-751+Voltage-dependent_T-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000008+1743-1867+Voltage-dependent_T-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000009+1411-1545+Voltage-dependent_T-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000012+149-268+Voltage-dependent_T-type_calcium_channel_subunit_alpha
|
PTHR10037+87-2049+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-130;915-1258;2008-2053;2127-2257
|
3.000
|
131-914;1259-2007;2054-2126
|
9ayl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
261304.170
|
5.935
|
-16.000
|
31.989
|
11.431
|
48.737
|
51.263
|
16.083
|
15.906
|
42.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2034.133
|
2145.010
|
3217.355
|
2100.935
|
1008.729
|
569.232
|
339.943
|
2049.921
|
607.577
|
4156.979
|
2635.807
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.354
|
-0.167
|
-0.505
|
-1.090
|
-0.812
|
-0.733
|
1.750
|
-2.452
|
-2.903
|
— | — | — | — |
No JSON data available for plots.