Hg_chrom4_TN10mRNA_8259
Organism: Heterodera glycines Gene Locus: chr4:7041246-7043017 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.313 | 1.159 | 0.725 | 0.229 | 1.107 | 0.426 | 1.305 | 0.831 | 1.107 | 0.898 | 0.856 | 2.541 | 1.107 | 0.383 | 1.017 | 1.044 | 0.871 | 1.409 | 1.022 | 0.684 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7763
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.366
|
0.007
|
0.218
|
0.091
|
0.044
|
0.062
|
0.762
|
0.100
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008836
|
1.000
|
1.000
|
Hsc_gene_986.t1
|
Hsc_gene_986.t1
|
— |
P51660.3 Peroxisomal multifunctional enzyme type 2 [Mus musculus]
|
KAI1724611.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.889|GO:0003674_0.759|GO:0008152_0.695|GO:0003824_0.685|GO:0009987_0.683|GO:0005575_0.652|GO:0110165_0.651|GO:0044238_0.553|GO:0044281_0.529|GO:0016020_0.527|GO:0044237_0.527|GO:0005622_0.505|GO:0005737_0.505
|
IPR002347+9-195_10-27_90-101_137-153_163-182_207-227+|IPR020904+150-178+|IPR036291+4-249+|IPR051687+1-299+
|
SM00822+9-189+
|
PF00106+9-195+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000185+9-251+peroxisomal_multifunctional_enzyme_type_2
|
PTHR45024+1-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
1zbq_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
32257.850
|
7.382
|
2.500
|
22.924
|
9.302
|
42.193
|
57.807
|
12.292
|
10.631
|
55.814
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
1397.145
|
1375.106
|
1407.608
|
1382.449
|
1529.790
|
1497.429
|
1925.183
|
1854.281
|
623.937
|
1530.113
|
1141.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.195
|
-0.130
|
— |
0.114
|
— |
0.374
|
— | — | — | — | — | — | — |
No JSON data available for plots.