Hg_chrom4_TN10mRNA_8260
Organism: Heterodera glycines Gene Locus: chr4:7044019-7044835 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.301 | 1.399 | 0.482 | 1.049 | 0.717 | 0.916 | 0.699 | 1.088 | 0.945 | 0.742 | 1.234 | 1.166 | 0.807 | 2.569 | 1.199 | 0.459 | 1.06 | 0.0 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7764
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.457
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
RRRR
|
16-37
|
0.951
|
18-56
|
0.993
|
— | — |
0.000
|
— | — |
0.421
|
0.341
|
0.024
|
0.539
|
0.057
|
0.177
|
0.205
|
0.442
|
0.355
|
0.434
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008837
|
1.000
|
1.000
|
Hsc_gene_985.t1
|
Hsc_gene_985.t1
|
— |
Q09362.2 Uncharacterized protein ZK1307.4 [Caenorhabditis elegans]
|
KAI6190202.1 Major sperm protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.812|GO:0005488_0.788|GO:0005515_0.733|GO:0042802_0.666|GO:0042803_0.656|GO:0046983_0.656
|
IPR000535+9-116_12-104+|IPR008962+12-106+|IPR013783+9-117+|IPR051774+5-115+
|
— |
PF00635+12-104+MSP_(Major_sperm_protein)_domain
|
— |
PTHR22947+5-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
102-143
|
1.000
|
1-101
|
1row_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
16020.060
|
10.049
|
6.000
|
32.867
|
6.993
|
52.448
|
47.552
|
18.881
|
13.986
|
52.448
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
173.337
|
114.850
|
231.752
|
82.966
|
54.058
|
128.908
|
84.181
|
94.426
|
152.803
|
347.071
|
263.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
-0.606
|
-1.372
|
-0.653
|
1.271
|
-0.607
|
-0.552
|
— | — | — | — | — | — |
No JSON data available for plots.