SCN Proteipedia

Hg_chrom4_TN10mRNA_8264

Organism: Heterodera glycines Gene Locus: chr4:7066595-7069048 Feature type: polypeptide

Protein Sequence

Length: 389

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.807	1.076	0.935	0.709	1.328	1.384	0.428	1.414	1.657	1.494	0.779	1.361	1.0	0.989	1.207	0.698	0.885	0.818	0.593	1.285	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7768	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.736	0.186	0.017	0.592	0.115	0.117	0.099	0.036	0.148	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008840	1.000	1.000	Hsc_gene_982.t1	Hsc_gene_982.t1	—	P39745.2 Mitogen-activated protein kinase mpk-1 [Caenorhabditis elegans]	KAI1724621.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004707\|GO:0005524\|GO:0006468	GO:0008150_0.980\|GO:0050896_0.903\|GO:0065007_0.901\|GO:0050789_0.898\|GO:0009987_0.863\|GO:0003674_0.846\|GO:0003824_0.846\|GO:0016740_0.846\|GO:0005575_0.845\|GO:0110165_0.845\|GO:0016772_0.842\|GO:0050794_0.841\|GO:0005622_0.837\|GO:0051716_0.837\|GO:0016301_0.832\|GO:0004672_0.830\|GO:0016773_0.830\|GO:0140096_0.830\|GO:0007154_0.814\|GO:0023052_0.812\|GO:0007165_0.803\|GO:0004674_0.773\|GO:0035556_0.717\|GO:0048518_0.694\|GO:0141124_0.660\|GO:0000165_0.628\|GO:0005737_0.624\|GO:0016020_0.603\|GO:0032502_0.587\|GO:0006950_0.580\|GO:0048856_0.579\|GO:0042221_0.565\|GO:0043226_0.564\|GO:0043229_0.560\|GO:0008152_0.559\|GO:0048583_0.557\|GO:0071840_0.546\|GO:0016043_0.545\|GO:0044237_0.543\|GO:0032501_0.532\|GO:0004707_0.520\|GO:0043227_0.520\|GO:0043170_0.517\|GO:0043231_0.514	IPR000719+39-327+\|IPR003527+73-175+\|IPR008271+159-171+\|IPR008349+27-44_132-141_187-197_245-256_266-276_327-337+\|IPR011009+32-336+\|IPR017441+45-69+\|IPR050117+33-363+	SM00220+39-327+	PF00069+39-327+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000624+122-345+Mitogen-activated_protein_kinase\|G3DSA:3.30.200.20:FF:000373+17-138+Mitogen-activated_protein_kinase_1	PTHR24055+33-363+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6;365-389	1.000	7-364	5wp1_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.595	44797.420	6.136	-2.500	26.992	11.568	47.301	52.699	13.882	13.111	43.188

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1336.523	2489.168	2100.097	1620.225	1228.820	1313.593	1311.295	2368.891	1032.349	410.993	677.288

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.474	-0.757	-0.266	-0.431	—	—	0.749	-0.712	—	—	—	—	—

No JSON data available for plots.

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