Hg_chrom4_TN10mRNA_8265
Organism: Heterodera glycines Gene Locus: chr4:7069314-7070732 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.369 | 1.477 | 1.154 | 0.0 | 1.146 | 0.814 | 0.378 | 1.587 | 2.234 | 1.216 | 1.042 | 2.179 | 1.47 | 0.916 | 1.08 | 0.907 | 1.041 | 1.122 | 0.814 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7769
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
3-23
|
0.998
|
5-35
|
0.982
|
— | — |
0.000
|
— | — |
0.124
|
0.978
|
0.005
|
0.215
|
0.018
|
0.030
|
0.057
|
0.013
|
0.039
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008841
|
1.000
|
1.000
|
Hsc_gene_981.t1
|
Hsc_gene_981.t1
|
— |
Q2TBS2.1 Large ribosomal subunit protein bL21m [Bos taurus]
|
KAF7638921.1 HIT-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005840
|
GO:0005575_0.885|GO:0110165_0.875|GO:0005622_0.844|GO:0005737_0.828|GO:0016020_0.797|GO:0043226_0.788|GO:0043229_0.767|GO:0043227_0.751|GO:0043231_0.737|GO:0005739_0.527
|
IPR028909+78-179+|IPR036164+77-180+
|
— |
PF00829+78-179+Ribosomal_prokaryotic_L21_protein
|
— |
PTHR21349+23-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-189
|
9uwh_S
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.566
|
21881.290
|
6.765
|
1.000
|
28.571
|
11.111
|
50.794
|
49.206
|
15.344
|
13.228
|
43.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
867.951
|
729.266
|
848.290
|
863.802
|
989.866
|
729.895
|
447.985
|
522.969
|
1015.960
|
1110.787
|
1070.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.107
|
0.135
|
0.165
|
-0.425
|
-0.696
|
-0.584
|
— | — | — | — | — | — |
No JSON data available for plots.