Hg_chrom4_TN10mRNA_8267
Organism: Heterodera glycines Gene Locus: chr4:7079265-7081198 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 1.305 | 0.605 | 0.717 | 0.52 | 0.586 | 0.718 | 0.624 | 1.386 | 1.854 | 0.441 | 1.223 | 2.888 | 0.84 | 0.679 | 0.861 | 0.818 | 1.355 | 1.119 | 1.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7771
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.643
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.057
|
0.054
|
0.006
|
0.123
|
0.428
|
0.708
|
0.510
|
0.015
|
0.457
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008842
|
1.000
|
1.000
|
Hsc_gene_23173.t1
|
Hsc_gene_23173.t1;Hsc_gene_979.t1
|
— |
Q99808.3 Equilibrative nucleoside transporter 1 [Homo sapiens]
|
KAI1716166.1 nucleoside transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005337|GO:0016020|GO:1901642
|
GO:0008150_0.917|GO:0006810_0.884|GO:0009987_0.884|GO:0051179_0.884|GO:0051234_0.884|GO:0055085_0.884|GO:0003674_0.862|GO:0005215_0.862|GO:0022857_0.862|GO:0005575_0.822|GO:0110165_0.816|GO:0016020_0.801|GO:0071944_0.791|GO:0005886_0.790|GO:0071705_0.730|GO:1901264_0.648|GO:0015931_0.639|GO:0015858_0.630|GO:1901505_0.605|GO:0015932_0.601|GO:1901642_0.599|GO:0005337_0.581|GO:0032238_0.501
|
IPR002259+3-469_35-462_167-465_173-195_311-328_372-389_426-442_444-468+|IPR036259+177-472+
|
— |
PF01733+167-465+Nucleoside_transporter
|
— |
PTHR10332+35-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-481
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
54349.800
|
6.975
|
2.000
|
13.929
|
17.879
|
32.848
|
67.152
|
7.484
|
6.445
|
48.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1819.379
|
1435.471
|
1431.688
|
1899.707
|
2084.964
|
2402.150
|
1243.202
|
1617.468
|
1368.331
|
2390.539
|
1952.450
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.233
|
0.267
|
0.516
|
0.102
|
0.219
|
-0.942
|
-0.676
|
-0.239
|
— | — | — | — | — |
No JSON data available for plots.