Hg_chrom4_TN10mRNA_8269
Organism: Heterodera glycines Gene Locus: chr4:7092984-7095363 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 1.026 | 0.668 | 1.014 | 0.449 | 0.88 | 0.554 | 0.49 | 1.525 | 1.954 | 0.26 | 1.009 | 1.498 | 0.943 | 1.501 | 1.261 | 1.005 | 1.114 | 2.074 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7773
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.760
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKSSAGFRNQMSEFDRKRI
|
42-65
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.079
|
0.087
|
0.021
|
0.117
|
0.230
|
0.329
|
0.163
|
0.072
|
0.835
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008843
|
1.000
|
1.000
|
Hsc_gene_977.t1
|
Hsc_gene_977.t1
|
— |
O62169.1 Nematocin receptor 2 [Caenorhabditis elegans]
|
KAI1716227.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.940|GO:0065007_0.816|GO:0009987_0.771|GO:0050789_0.733|GO:0005575_0.729|GO:0110165_0.729|GO:0050794_0.683|GO:0050896_0.654|GO:0003674_0.653|GO:0051716_0.627|GO:0023052_0.621|GO:0016020_0.611|GO:0007154_0.607|GO:0007165_0.591|GO:0038023_0.531|GO:0060089_0.531|GO:0071944_0.526|GO:0005886_0.509
|
IPR000276+21-45_36-356_58-79_104-126_134-155_201-224_300-324_338-364+|IPR017452+36-356+|IPR052665+24-390+
|
— |
PF00001+36-356+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24224+24-390+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-408
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
46041.890
|
8.990
|
13.000
|
16.422
|
12.010
|
39.216
|
60.784
|
10.049
|
6.373
|
49.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
147.084
|
348.173
|
552.961
|
144.845
|
54.630
|
47.251
|
156.280
|
192.665
|
99.577
|
7.507
|
46.966
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.438
|
-1.402
|
-1.824
|
-1.438
|
— |
1.737
|
1.925
|
— | — | — | — | — | — |
No JSON data available for plots.