Hg_chrom4_TN10mRNA_8270
Organism: Heterodera glycines Gene Locus: chr4:7096308-7097558 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.09 | 0.727 | 0.568 | 0.718 | 1.128 | 1.202 | 1.054 | 1.302 | 1.273 | 1.126 | 1.894 | 0.919 | 0.579 | 0.601 | 1.701 | 0.67 | 0.939 | 0.395 | 1.202 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7774
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKLKAKKAK
|
27-52
|
0.961
|
— | — | — | — |
0.000
|
— | — |
0.340
|
0.257
|
0.082
|
0.614
|
0.225
|
0.014
|
0.166
|
0.001
|
0.084
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008844
|
1.000
|
1.000
|
Hsc_gene_976.t1
|
Hsc_gene_976.t1
|
— |
Q7SYU0.3 Small ribosomal subunit protein eS8 [Xenopus laevis]
|
KAF7638884.1 40S ribosomal protein S8 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.830|GO:0110165_0.821|GO:0005622_0.723|GO:0005737_0.630|GO:0043226_0.614|GO:0043229_0.612|GO:0003674_0.566|GO:0008150_0.501
|
IPR001047+14-191_16-176+|IPR022309+11-174+|IPR042563+89-153+
|
— |
PF01201+11-174+Ribosomal_protein_S8e
|
G3DSA:1.10.168.20:FF:000001+90-153+40S_ribosomal_protein_S8
|
PTHR10394+14-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31
|
1.000
|
32-192
|
9cai_AI
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
21697.090
|
10.722
|
23.500
|
33.333
|
9.375
|
51.562
|
48.438
|
23.438
|
9.896
|
42.708
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
13415.880
|
4716.775
|
7683.059
|
14234.688
|
15068.574
|
12135.875
|
9513.931
|
5005.653
|
24411.923
|
14751.076
|
18891.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.475
|
1.456
|
0.998
|
— |
-0.296
|
-0.341
|
-1.386
|
1.071
|
— | — | — | — | — |
No JSON data available for plots.