SCN Proteipedia

Hg_chrom4_TN10mRNA_8271

Organism: Heterodera glycines Gene Locus: chr4:7098072-7101916 Feature type: polypeptide

Protein Sequence

Length: 774

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.811	0.961	1.081	0.668	1.572	0.629	0.631	1.034	1.263	1.275	1.135	1.596	1.077	0.745	1.793	0.701	1.017	0.861	0.298	0.798	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7775	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.966

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RQRSKRRRK,KRRRKQWTALRLLRR	—	—	—	—	—	—	0.000	—	—	0.792	0.219	0.025	0.264	0.085	0.026	0.072	0.411	0.069	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002112	1.000	3.000	Hsc_gene_9506.t1;Hsc_gene_9506.t2;Hsc_gene_975.t1	Hsc_gene_9506.t1;Hsc_gene_9506.t2;Hsc_gene_975.t1	—	P49739.2 Maternal DNA replication licensing factor mcm3 [Xenopus laevis]	KAI1716223.1 MCM2/3/5 family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0005524\|GO:0006260\|GO:0006270\|GO:0016887\|GO:0032508\|GO:0042555	GO:0005575_0.865\|GO:0110165_0.820\|GO:0005622_0.765\|GO:0016020_0.752\|GO:0008150_0.751\|GO:0043226_0.711\|GO:0009987_0.701\|GO:0043229_0.693\|GO:0043227_0.660\|GO:0043231_0.627\|GO:0008152_0.605\|GO:0044238_0.590\|GO:0044237_0.588\|GO:0009058_0.578\|GO:0043170_0.575\|GO:0044249_0.571\|GO:0009059_0.554\|GO:0032991_0.551\|GO:0006139_0.544\|GO:0005634_0.539\|GO:0034654_0.528\|GO:0090304_0.526\|GO:0071840_0.516\|GO:0141187_0.516\|GO:0016043_0.510	IPR001208+286-509_299-505_340-355_400-414_428-441_452-464_479-487+\|IPR003593+341-493+\|IPR008046+192-206_218-230_468-478_501-511_642-657+\|IPR012340+23-269_120-250+\|IPR018525+408-416+\|IPR027417+280-674_309-670+\|IPR027925+25-109+\|IPR031327+14-709_115-655+\|IPR033762+120-250+\|IPR041562+568-650+	SM00350+115-655+\|SM00382+341-493+	PF00493+286-509+MCM_P-loop_domain\|PF14551+25-109+MCM_N-terminal_domain\|PF17207+120-250+MCM_OB_domain\|PF17855+568-650+MCM_AAA-lid_domain	—	PTHR11630+14-709+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-11;665-711;772-774	2.000	12-664;712-771	8ouw_3	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.617	88629.580	8.307	15.000	33.721	9.044	51.421	48.579	18.346	15.375	44.961

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	753.783	431.914	452.557	791.325	1105.807	695.589	1397.363	391.260	46.145	1288.510	756.068

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.736	0.915	0.452	-0.654	1.018	-0.938	1.980	-4.966	—	—	—	—

No JSON data available for plots.

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