Hg_chrom4_TN10mRNA_8272
Organism: Heterodera glycines Gene Locus: chr4:7101892-7104180 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.604 | 0.945 | 0.616 | 0.467 | 1.317 | 0.868 | 0.994 | 1.129 | 1.756 | 1.495 | 0.889 | 1.328 | 1.505 | 0.955 | 1.152 | 1.096 | 0.703 | 0.821 | 0.695 | 0.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7776
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.895
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
plastid|endoplasmic_reticulum
|
— | — |
48-88
|
0.825
|
37-77
|
0.999
|
— | — |
0.000
|
— | — |
0.199
|
0.413
|
0.648
|
0.234
|
0.662
|
0.303
|
0.488
|
0.077
|
0.165
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002110
|
3.000
|
1.000
|
Hsc_gene_974.t1
|
— | — |
Q7SYV0.1 Phenylalanine--tRNA ligase alpha subunit B [Xenopus laevis]
|
KAI6243917.1 Phenylalanine--tRNA ligase [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000049|GO:0004812|GO:0005524|GO:0043039
|
GO:0005575_0.795|GO:0110165_0.795|GO:0005622_0.622|GO:0005737_0.603|GO:0008150_0.595|GO:0003674_0.542|GO:0009987_0.521
|
IPR002319+265-427+|IPR006195+293-435+|IPR040725+161-215+|IPR045864+225-443_254-427+
|
— |
PF01409+265-427+tRNA_synthetases_class_II_core_domain_(F)|PF18553+161-215+PheRS_DNA_binding_domain_3
|
— |
PTHR11538+263-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-443
|
8s8b_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
49662.330
|
7.728
|
6.000
|
25.056
|
11.287
|
44.470
|
55.530
|
13.770
|
11.287
|
44.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
304.935
|
242.618
|
226.878
|
164.953
|
186.232
|
137.766
|
423.839
|
297.402
|
242.020
|
522.693
|
402.404
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.328
|
-0.694
|
-0.350
|
— |
-0.420
|
1.632
|
1.006
|
0.654
|
— | — | — | — | — |
No JSON data available for plots.