Hg_chrom4_TN10mRNA_8273
Organism: Heterodera glycines Gene Locus: chr4:7104336-7104868 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 1.011 | 0.791 | 0.857 | 1.139 | 0.637 | 0.665 | 1.242 | 1.518 | 1.343 | 1.318 | 2.192 | 1.035 | 0.717 | 1.268 | 1.065 | 0.815 | 1.035 | 0.478 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7777
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.379
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
36-56
|
1.000
|
21-52
|
0.953
|
— | — |
0.000
|
— | — |
0.382
|
0.415
|
0.152
|
0.605
|
0.196
|
0.126
|
0.188
|
0.086
|
0.297
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008845
|
1.000
|
1.000
|
Hsc_gene_9507.t1
|
Hsc_gene_962.t1
|
— | — |
KAH7731155.1 fatty acid synthase-like protein [Aphelenchus avenae]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0005575_0.897|GO:0110165_0.888|GO:0009987_0.855|GO:0005622_0.842|GO:0003674_0.827|GO:0005737_0.794|GO:0008152_0.778|GO:0044237_0.771|GO:0044238_0.766|GO:0003824_0.712|GO:0044281_0.703|GO:0006082_0.684|GO:0019752_0.684|GO:0043436_0.684|GO:0006629_0.679|GO:0032787_0.677|GO:0044255_0.677|GO:0006631_0.676|GO:0016740_0.675|GO:0016746_0.659|GO:0016747_0.655|GO:0016020_0.636|GO:0043226_0.620|GO:0043229_0.611|GO:0043227_0.575|GO:0043231_0.572|GO:0009058_0.545|GO:0050896_0.540|GO:0005488_0.532|GO:0044249_0.525
|
IPR042104+83-160+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
146-161
|
1.000
|
1-145
|
6fn6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
18004.020
|
9.594
|
8.000
|
28.571
|
8.075
|
47.826
|
52.174
|
17.391
|
11.180
|
47.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
141.258
|
95.067
|
60.050
|
104.610
|
126.626
|
143.790
|
208.737
|
115.133
|
220.250
|
132.560
|
170.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.895
|
— |
0.912
|
0.242
|
— |
0.549
|
-0.426
|
1.002
|
— | — | — | — | — |
No JSON data available for plots.