Hg_chrom4_TN10mRNA_8278
Organism: Heterodera glycines Gene Locus: chr4:7137830-7147668 Feature type: polypeptideProtein Sequence
Length: 2,345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 1.269 | 0.985 | 0.338 | 1.016 | 1.148 | 0.513 | 1.407 | 1.384 | 1.36 | 0.976 | 1.731 | 1.256 | 1.041 | 1.332 | 0.701 | 0.923 | 0.911 | 1.935 | 1.242 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7782
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— |
HRPPKPQKKR,RREKRDRRHFKRMRF,RKIIRDHGDMTSRKYRH,KKWKQLQSKRYAEKRKFG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.630
|
0.285
|
0.030
|
0.398
|
0.170
|
0.121
|
0.105
|
0.037
|
0.273
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008848
|
1.000
|
1.000
|
Hsc_gene_972.t1
|
Hsc_gene_972.t1
|
C50C3.6
|
P34369.1 Pre-mRNA-splicing factor 8 homolog [Caenorhabditis elegans]
|
KAI1726898.1 PROCN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0003723|GO:0005515|GO:0005681|GO:0008233|GO:0008237|GO:0017070|GO:0030623
|
GO:0005575_0.884|GO:0110165_0.879|GO:0005622_0.833|GO:0008150_0.818|GO:0016020_0.814|GO:0009987_0.762|GO:0008152_0.696|GO:0043226_0.676|GO:0044238_0.674|GO:0043229_0.661|GO:0009058_0.657|GO:0044237_0.655|GO:0043170_0.635|GO:0044249_0.632|GO:0003674_0.623|GO:0043227_0.619|GO:0043231_0.604|GO:0009059_0.600|GO:0006139_0.594|GO:0010467_0.591|GO:0034654_0.578|GO:0090304_0.574|GO:0141187_0.571|GO:0016070_0.568|GO:0032774_0.561|GO:0006396_0.545|GO:0016071_0.538|GO:0006397_0.535|GO:0008380_0.534|GO:0000375_0.530|GO:0000377_0.530|GO:0000398_0.530|GO:0005488_0.522
|
IPR000555+2109-2242_2110-2209+|IPR012337+1006-1262_1773-2025+|IPR012591+66-217+|IPR012592+405-810+|IPR012984+2221-2342+|IPR019580+1452-1608+|IPR019581+1220-1351+|IPR019582+995-1085+|IPR021983+1770-1999_1776-2026+|IPR027652+28-2332+|IPR037518+2113-2243+|IPR042516+1193-1312+|IPR043172+1771-1931+|IPR043173+1932-2030+
|
SM00232+2109-2242+
|
PF01398+2110-2209+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF08082+66-217+PRO8NT_(NUC069),_PrP8_N-terminal_domain|PF08083+405-810+PROCN_(NUC071)_domain|PF08084+2221-2342+PROCT_(NUC072)_domain|PF10596+1452-1608+U6-snRNA_interacting_domain_of_PrP8|PF10597+1220-1351+U5-snRNA_binding_site_2_of_PrP8|PF10598+995-1085+RNA_recognition_motif_of_the_spliceosomal_PrP8|PF12134+1770-1999+PRP8_domain_IV_core
|
G3DSA:1.20.80.40:FF:000001+1932-2030+Pre-mRNA-processing-splicing_factor_8|G3DSA:3.30.420.230:FF:000001+1771-1931+Pre-mRNA-processing-splicing_factor_8|G3DSA:3.30.43.40:FF:000001+1193-1312+Pre-mRNA-processing-splicing_factor_8|G3DSA:3.40.140.10:FF:000002+2068-2345+Pre-mRNA-processing-splicing_factor_8|G3DSA:3.90.1570.40:FF:000001+1591-1762+Pre-mRNA-processing-splicing_factor_8
|
PTHR11140+28-2332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
2028-2072;2345-2345
|
2.000
|
1-2027;2073-2344
|
4i43_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
274673.100
|
9.177
|
67.000
|
27.292
|
14.072
|
47.761
|
52.239
|
15.778
|
11.514
|
43.156
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
7886.052
|
10137.006
|
7866.660
|
9252.977
|
10232.638
|
8945.779
|
7758.405
|
6128.314
|
8999.949
|
5130.849
|
6789.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.594
|
-0.269
|
0.342
|
0.114
|
-0.179
|
-0.196
|
-0.649
|
0.482
|
— | — | — | — | — |
No JSON data available for plots.