Hg_chrom4_TN10mRNA_8281
Organism: Heterodera glycines Gene Locus: chr4:7153825-7155271 Feature type: polypeptideProtein Sequence
Length: 223
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.417 | 0.73 | 1.141 | 0.464 | 1.121 | 1.61 | 0.908 | 1.794 | 0.797 | 0.727 | 0.611 | 1.583 | 1.246 | 1.207 | 2.105 | 1.153 | 0.735 | 1.359 | 1.38 | 0.396 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7785
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KRRTMASAKRDKVKRL,KKDRDKQRQGGNSSPSKRR,RDKQRQGGNSSPSKRRTMASAKRDKVKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.189
|
0.328
|
0.038
|
0.459
|
0.107
|
0.616
|
0.494
|
0.011
|
0.482
|
0.352
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008850
|
1.000
|
1.000
|
Hsc_gene_969.t1
|
Hsc_gene_969.t1;Hsc_gene_969.t2
|
— | — |
KAI6188012.1 Sodium leak channel non-selective protein [Aphelenchoides besseyi]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-95
|
1.000
|
96-223
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
25526.720
|
8.735
|
7.000
|
30.942
|
11.211
|
52.915
|
47.085
|
17.937
|
13.004
|
49.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
706.211
|
1385.054
|
1417.294
|
609.797
|
236.153
|
539.071
|
361.964
|
1361.011
|
535.067
|
471.995
|
499.026
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.197
|
-1.321
|
-1.107
|
-1.401
|
1.205
|
-0.564
|
1.236
|
-1.769
|
— | — | — | — | — |
No JSON data available for plots.