SCN Proteipedia

Hg_chrom4_TN10mRNA_8282

Organism: Heterodera glycines Gene Locus: chr4:7160537-7167541 Feature type: polypeptide

Protein Sequence

Length: 688 (Signal peptide: 1-27)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.93	0.946	0.872	2.055	1.09	0.783	0.709	1.163	0.646	1.257	0.903	1.197	1.171	1.23	1.75	1.017	0.786	0.727	0.783	0.641	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7786	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	nucleus	RRDNGSVLELPEPDRVRER	—	—	—	—	1-27	0.919	0.519	0.000	0.000	0.187	0.222	0.016	0.307	0.194	0.115	0.121	0.065	0.379	0.839

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003885	1.000	2.000	Hsc_gene_968.t1;Hsc_gene_968.t2	Hsc_gene_968.t1;Hsc_gene_968.t2	—	P34710.1 Netrin unc-6 [Caenorhabditis elegans]	KAI1713493.1 laminin EGF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.833\|GO:0110165_0.833\|GO:0008150_0.820\|GO:0009987_0.741\|GO:0032502_0.667\|GO:0048856_0.667\|GO:0032501_0.629\|GO:0071944_0.622\|GO:0065007_0.609\|GO:0050789_0.592\|GO:0007275_0.588\|GO:0016020_0.559\|GO:0030154_0.555\|GO:0048869_0.555\|GO:0048731_0.546\|GO:0050794_0.535\|GO:0009653_0.533\|GO:0071840_0.524\|GO:0016043_0.521\|GO:0005622_0.515	IPR000742+327-338+\|IPR001134+497-655+\|IPR002049+307-352_308-350_308-361_363-417_364-419_364-424_426-475_427-467_427-474_427-476_446-474+\|IPR008211+45-306_47-307_51-306+\|IPR008993+397-595_491-607+\|IPR018933+509-648_510-596+\|IPR050440+422-641+	SM00136+45-306+\|SM00180+308-361_364-424_427-474+\|SM00643+509-648+	PF00053+308-350_364-419_427-467+Laminin_EGF_domain\|PF00055+51-306+Laminin_N-terminal_(Domain_VI)\|PF01759+510-596+UNC-6/NTR/C345C_module	G3DSA:2.10.25.10:FF:000048+431-474+Netrin_3\|G3DSA:2.10.25.10:FF:000081+330-430+Netrin_1\|G3DSA:2.60.120.260:FF:000098+25-329+Netrin-A,_isoform_B	PTHR10574+422-641+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	646-688	1.000	1-645	8edk_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.872	77162.550	8.507	30.000	28.198	9.738	47.238	52.762	16.860	11.337	51.890

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	485.173	641.268	1058.822	896.808	600.093	360.180	170.428	555.020	71.358	463.132	295.229

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.494	0.347	-0.131	-0.611	-0.722	-1.069	0.518	-1.560	—	3.851	—	—	5.067

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