Hg_chrom4_TN10mRNA_8285
Organism: Heterodera glycines Gene Locus: chr4:7177016-7187812 Feature type: polypeptideProtein Sequence
Length: 1,056
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.211 | 1.299 | 0.551 | 0.653 | 1.373 | 1.311 | 0.857 | 0.852 | 1.094 | 1.331 | 0.545 | 1.003 | 1.289 | 0.819 | 0.947 | 1.353 | 0.838 | 0.89 | 0.437 | 0.641 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7789
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.644
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKNTEAENNDAEAKKKDA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.177
|
0.016
|
0.201
|
0.283
|
0.442
|
0.396
|
0.065
|
0.742
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003886
|
1.000
|
2.000
|
Hsc_gene_966.t1;Hsc_gene_966.t2
|
Hsc_gene_966.t1;Hsc_gene_966.t2
|
— |
Q8K1C7.1 Monocarboxylate transporter 14 [Mus musculus]
|
KAH7731159.1 major facilitator superfamily transporter [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.946|GO:0110165_0.942|GO:0016020_0.894|GO:0071944_0.847|GO:0005886_0.842|GO:0008150_0.837|GO:0051179_0.815|GO:0006810_0.808|GO:0051234_0.808|GO:0009987_0.785|GO:0003674_0.702|GO:0055085_0.694|GO:0005215_0.633|GO:0022857_0.633|GO:0015711_0.503
|
IPR011701+141-324_665-852+|IPR036259+132-378_134-842_659-876+|IPR050327+128-833+
|
— |
PF07690+141-324_665-852+Major_Facilitator_Superfamily
|
— |
PTHR11360+128-833+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-44;335-486;850-1056
|
2.000
|
45-334;487-849
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
114575.090
|
4.913
|
-23.000
|
21.212
|
9.091
|
46.496
|
53.504
|
9.943
|
11.269
|
52.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
2242.824
|
2780.985
|
3288.874
|
3694.970
|
1735.350
|
1470.150
|
1319.415
|
1941.407
|
3117.368
|
1387.648
|
2128.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.273
|
0.277
|
-1.122
|
-0.225
|
— |
0.299
|
-0.417
|
— | — | — | — | — |
No JSON data available for plots.