Hg_chrom4_TN10mRNA_8286
Organism: Heterodera glycines Gene Locus: chr4:7190042-7193368 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 0.952 | 0.39 | 0.739 | 0.747 | 0.75 | 0.789 | 0.195 | 2.036 | 1.633 | 0.62 | 1.376 | 2.058 | 0.787 | 0.756 | 0.947 | 1.055 | 1.181 | 0.75 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7790
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.036
|
0.121
|
0.007
|
0.133
|
0.266
|
0.548
|
0.382
|
0.020
|
0.757
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008852
|
1.000
|
1.000
|
Hsc_gene_964.t1
|
Hsc_gene_964.t1;Hsc_gene_965.t1
|
— |
Q9Z127.2 Large neutral amino acids transporter small subunit 1 [Mus musculus]
|
KAI1713488.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.873|GO:0005575_0.823|GO:0110165_0.822|GO:0006810_0.797|GO:0051179_0.797|GO:0051234_0.797|GO:0009987_0.783|GO:0016020_0.782|GO:0071944_0.760|GO:0005886_0.748|GO:0055085_0.745|GO:0003674_0.681|GO:0005215_0.602|GO:0022857_0.602|GO:0003333_0.591|GO:0006865_0.591|GO:0071705_0.547
|
IPR002293+58-474+|IPR050598+44-510+
|
— |
PF13520+58-474+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000003+48-495+Y+L_amino_acid_transporter_1_isoform_X1
|
PTHR11785+44-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37
|
1.000
|
38-513
|
7ccs_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
56612.810
|
8.375
|
7.000
|
14.815
|
12.476
|
34.893
|
65.107
|
8.187
|
6.628
|
48.733
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
730.462
|
817.018
|
764.005
|
935.803
|
1129.622
|
957.720
|
1675.511
|
771.949
|
320.979
|
310.678
|
315.093
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.328
|
— |
0.402
|
0.239
|
-0.223
|
0.815
|
-0.417
|
1.258
|
— | — | — | — | — |
No JSON data available for plots.