Hg_chrom4_TN10mRNA_8287
Organism: Heterodera glycines Gene Locus: chr4:7195225-7198455 Feature type: polypeptideProtein Sequence
Length: 547
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 1.446 | 0.831 | 0.946 | 1.066 | 0.75 | 0.501 | 0.731 | 1.544 | 1.038 | 0.831 | 1.506 | 1.625 | 1.09 | 1.418 | 1.201 | 0.869 | 0.942 | 0.844 | 0.591 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7791
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.479
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
41-61
|
0.986
|
26-54
|
0.962
|
— | — |
0.000
|
— | — |
0.695
|
0.103
|
0.016
|
0.468
|
0.029
|
0.048
|
0.045
|
0.017
|
0.077
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008853
|
1.000
|
1.000
|
Hsc_gene_963.t1
|
Hsc_gene_963.t1
|
— |
Q17370.1 Nuclear hormone receptor family member nhr-47 [Caenorhabditis elegans]
|
KAI1720871.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.901|GO:0009987_0.805|GO:0005575_0.803|GO:0110165_0.801|GO:0065007_0.770|GO:0050789_0.761|GO:0003674_0.728|GO:0005622_0.722|GO:0050794_0.694|GO:0008152_0.685|GO:0043226_0.679|GO:0044237_0.674|GO:0009058_0.672|GO:0043170_0.656|GO:0043229_0.654|GO:0044249_0.649|GO:0044238_0.641|GO:0009059_0.638|GO:0010467_0.625|GO:0019222_0.624|GO:0005488_0.622|GO:0031323_0.622|GO:0060255_0.611|GO:0009889_0.601|GO:0031326_0.601|GO:0010556_0.599|GO:0010468_0.598|GO:0006139_0.591|GO:0016020_0.591|GO:0080090_0.581|GO:0034654_0.579|GO:0090304_0.575|GO:0141187_0.568|GO:0016070_0.567|GO:0032774_0.563|GO:0019219_0.551|GO:0051252_0.550|GO:0006351_0.548|GO:2001141_0.547|GO:0006355_0.545|GO:0097159_0.512|GO:0043227_0.507
|
IPR000536+202-536_245-507_248-305_415-520+|IPR001628+17-83_17-84_19-66_20-36_20-46_36-51+|IPR001723+246-267_434-449_495-512+|IPR013088+13-107+|IPR035500+232-531_243-535+|IPR049636+20-83+|IPR050274+11-532+
|
SM00399+17-84+|SM00430+245-507+
|
PF00104+248-305_415-520+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+19-66+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+11-532+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-547
|
2ebl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
61753.880
|
8.424
|
12.000
|
24.863
|
10.420
|
47.715
|
52.285
|
13.894
|
10.969
|
50.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
1408.337
|
1578.941
|
1852.577
|
1399.671
|
1343.624
|
1244.201
|
2050.016
|
2174.430
|
1308.834
|
813.549
|
1025.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.311
|
-0.296
|
— | — |
0.732
|
0.700
|
— | — | — | — | — | — |
No JSON data available for plots.