SCN Proteipedia

Hg_chrom4_TN10mRNA_8288

Organism: Heterodera glycines Gene Locus: chr4:7198890-7211226 Feature type: polypeptide

Protein Sequence

Length: 2,596

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.86	0.967	1.016	0.677	1.162	1.077	0.94	1.175	1.079	1.343	0.677	1.473	1.006	0.844	1.297	0.963	0.897	1.08	0.859	0.85	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7792	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.964

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RKRK,RRRR	—	—	—	—	—	—	0.000	—	—	0.158	0.251	0.044	0.746	0.221	0.200	0.209	0.060	0.271	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008854	1.000	1.000	Hsc_gene_962.t1	Hsc_gene_962.t1	—	P12276.5 Fatty acid synthase [Gallus gallus]	KAI1713485.1 acyl transferase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004315\|GO:0006633\|GO:0009058\|GO:0016491\|GO:0016740\|GO:0016746\|GO:0031177	GO:0008150_0.933\|GO:0009987_0.829\|GO:0008152_0.765\|GO:0005575_0.656\|GO:0003674_0.649\|GO:0110165_0.648\|GO:0044237_0.627\|GO:0009058_0.578\|GO:0044281_0.567\|GO:0044238_0.558\|GO:0005622_0.552	IPR001031+2312-2421+\|IPR001227+579-696+\|IPR009081+2174-2251_2180-2240+\|IPR011032+1664-1788+\|IPR013968+1971-2066+\|IPR014030+83-319+\|IPR014031+324-379_381-424+\|IPR014043+581-687_583-837_693-857+\|IPR016035+580-826+\|IPR016036+694-737+\|IPR016039+79-473_81-488+\|IPR018201+233-249+\|IPR020806+2177-2235+\|IPR020841+82-473_85-476+\|IPR020843+1649-1940+\|IPR029058+2291-2426_2292-2570+\|IPR029063+1160-1506_1397-1501+\|IPR032821+427-548+\|IPR036291+1753-1899_1970-2122+\|IPR036736+2171-2253_2180-2242+\|IPR042104+908-1157+\|IPR049391+1523-1626+\|IPR049900+895-1160+\|IPR050091+80-689+	SM00822+1970-2121+\|SM00823+2177-2235+\|SM00825+85-476+\|SM00827+583-837+\|SM00829+1649-1940+	PF00109+83-319+Beta-ketoacyl_synthase,_N-terminal_domain\|PF00550+2180-2240+Phosphopantetheine_attachment_site\|PF00698+581-687_693-857+Acyl_transferase_domain\|PF00975+2312-2421+Thioesterase_domain\|PF02801+324-379_381-424+Beta-ketoacyl_synthase,_C-terminal_domain\|PF08659+1971-2066+KR_domain\|PF13602+1818-1940+Zinc-binding_dehydrogenase\|PF16197+427-548+Ketoacyl-synthetase_C-terminal_extension\|PF21149+1523-1626+Fatty_acid_synthase,_pseudo-KR_domain	G3DSA:1.10.1200.10:FF:000013+2171-2254+Fatty_acid_synthase	PTHR43775+80-689+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-90;2580-2596	1.000	91-2579	3hhd_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.614	288432.970	6.130	-14.500	25.732	9.977	46.302	53.698	13.174	12.558	50.732

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	6672.675	6109.129	4694.166	14650.550	13580.015	14228.196	10138.152	7025.033	275.702	2576.712	1590.565

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.607	1.125	1.749	-0.142	—	-0.479	-1.129	0.674	-3.361	5.890	2.624	—	—

No JSON data available for plots.

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