Hg_chrom4_TN10mRNA_8290
Organism: Heterodera glycines Gene Locus: chr4:7218466-7222818 Feature type: polypeptideProtein Sequence
Length: 822
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 1.245 | 0.995 | 0.294 | 2.332 | 2.028 | 0.391 | 1.034 | 1.054 | 1.282 | 0.958 | 1.503 | 0.406 | 0.515 | 1.49 | 1.234 | 0.917 | 0.535 | 0.281 | 0.286 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|golgi_apparatus
|
— |
RKLSEYSGRQAKEVRKLKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.236
|
0.111
|
0.023
|
0.662
|
0.178
|
0.431
|
0.702
|
0.037
|
0.202
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008856
|
1.000
|
1.000
|
Hsc_gene_959.t1
|
— | — | — |
KAI1724699.1 TATA element modulatory factor 1 TATA binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-503;542-761;821-822
|
2.000
|
504-541;762-820
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
93829.890
|
4.666
|
-39.500
|
35.158
|
4.866
|
62.652
|
37.348
|
15.693
|
19.465
|
42.822
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
2851.794
|
4039.708
|
2663.188
|
1895.323
|
1833.573
|
1804.878
|
2699.925
|
2364.084
|
5365.458
|
1964.749
|
3422.196
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.832
|
-1.229
|
-0.381
|
— | — |
0.593
|
0.284
|
0.335
|
— | — | — | — | — |
No JSON data available for plots.