Hg_chrom4_TN10mRNA_8291
Organism: Heterodera glycines Gene Locus: chr4:7223307-7228903 Feature type: polypeptideProtein Sequence
Length: 781
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 0.893 | 0.954 | 1.325 | 0.896 | 1.051 | 0.655 | 1.665 | 0.854 | 1.211 | 0.369 | 0.753 | 1.601 | 1.428 | 1.725 | 1.28 | 0.714 | 0.873 | 1.182 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7795
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
PRPAPFRRPRRARQRRLFR
|
63-83
|
0.937
|
24-78
|
0.997
|
— | — |
0.009
|
— | — |
0.124
|
0.068
|
0.048
|
0.203
|
0.341
|
0.375
|
0.337
|
0.037
|
0.424
|
0.321
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008857
|
1.000
|
1.000
|
Hsc_gene_958.t1
|
Hsc_gene_958.t1
|
— |
O62446.1 Leishmanolysin-like peptidase [Caenorhabditis elegans]
|
KAH7731147.1 leishmanolysin-like peptidase-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0007155|GO:0016020
|
GO:0008150_0.759|GO:0005575_0.757|GO:0110165_0.757|GO:0005622_0.634|GO:0009987_0.586|GO:0032501_0.580|GO:0065007_0.575|GO:0003674_0.564|GO:0050789_0.561|GO:0005737_0.553|GO:0032502_0.547|GO:0048856_0.547|GO:0050794_0.545|GO:0007275_0.520|GO:0048731_0.508
|
IPR001577+105-664_205-651+
|
— |
PF01457+205-651+Leishmanolysin
|
G3DSA:3.90.132.10:FF:000001+316-440+leishmanolysin-like_peptidase_isoform_X2
|
PTHR10942+105-664+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-781
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
88221.980
|
7.595
|
15.000
|
24.840
|
13.444
|
46.095
|
53.905
|
14.213
|
10.627
|
52.113
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1112.822
|
1406.051
|
1179.126
|
2464.272
|
2752.656
|
1527.182
|
271.556
|
832.420
|
120.815
|
865.509
|
546.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.484
|
0.673
|
1.172
|
0.128
|
-0.833
|
-2.484
|
-0.980
|
-1.475
|
-2.958
|
— | — | — | — |
No JSON data available for plots.