SCN Proteipedia

Hg_chrom4_TN10mRNA_8293

Organism: Heterodera glycines Gene Locus: chr4:7234933-7237990 Feature type: polypeptide

Protein Sequence

Length: 423

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.935	0.605	0.559	1.141	0.473	0.546	0.563	1.064	0.998	1.533	0.645	2.086	2.101	0.909	1.689	1.182	0.814	1.254	2.364	0.695	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7797	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRIWHFMEARRMRRH,RKWHKNAISMKRKTT,RRHGESDAQMARKRRLL,RRMRRHGESDAQMARKRRL,KWHKNAISMKRKTTEGKARERDKGEKRGEDKTKGQTEKKRRGGTEKR	—	—	—	—	—	—	0.000	—	—	0.112	0.090	0.007	0.192	0.184	0.258	0.192	0.005	0.863	0.080

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003888	2.000	1.000	Hsc_gene_954.t1	Hsc_gene_954.t1;Hsc_gene_954.t2	—	P97295.2 Neuropeptide Y receptor type 2 [Mus musculus]	KAF7638891.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0004983\|GO:0007186\|GO:0016020	GO:0008150_0.940\|GO:0009987_0.881\|GO:0065007_0.854\|GO:0050789_0.830\|GO:0005575_0.821\|GO:0110165_0.818\|GO:0050896_0.817\|GO:0003674_0.800\|GO:0050794_0.781\|GO:0007154_0.773\|GO:0023052_0.762\|GO:0051716_0.751\|GO:0016020_0.739\|GO:0060089_0.730\|GO:0038023_0.729\|GO:0071944_0.719\|GO:0007165_0.711\|GO:0005886_0.701\|GO:0007186_0.675\|GO:0004888_0.665\|GO:0004930_0.601\|GO:0005488_0.583\|GO:0032501_0.573	IPR000276+31-55_46-150_64-85_109-131_115-131_168-327_221-244_268-292_309-335+\|IPR000611+56-68_86-98_109-124_314-323_325-338+\|IPR017452+46-327+	—	PF00001+46-150_168-327+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24235+169-366+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	355-423	1.000	1-354	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.587	48376.170	10.475	32.500	20.567	15.130	38.534	61.466	14.657	5.910	47.991

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	423.890	222.182	359.680	130.488	36.042	102.574	79.100	364.370	1061.686	572.842	782.346

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.465	-0.905	-1.354	-1.889	1.524	-0.366	1.729	-2.064	—	-2.866	—	—	—

No JSON data available for plots.

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