Hg_chrom4_TN10mRNA_8310
Organism: Heterodera glycines Gene Locus: chr4:7261722-7265348 Feature type: polypeptideProtein Sequence
Length: 728
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 0.671 | 1.224 | 0.9 | 1.168 | 1.198 | 0.736 | 1.03 | 1.099 | 1.207 | 0.874 | 1.535 | 1.374 | 1.057 | 1.458 | 0.981 | 0.946 | 0.874 | 0.845 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7813
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKHK
|
23-43
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.231
|
0.236
|
0.010
|
0.750
|
0.180
|
0.448
|
0.185
|
0.077
|
0.474
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008865
|
1.000
|
1.000
|
Hsc_gene_943.t1
|
Hsc_gene_943.t1
|
— |
Q9XUB9.1 Nicotinic receptor-associated protein 1 [Caenorhabditis elegans]
|
KAI1724698.1 copine domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005544
|
GO:0005575_0.913|GO:0110165_0.909|GO:0016020_0.756|GO:0008150_0.724|GO:0009987_0.642|GO:0043226_0.605|GO:0043227_0.546|GO:0005622_0.524|GO:0071944_0.518|GO:0005886_0.502
|
IPR000008+67-198_82-197_88-187_206-330_223-329_228-320+|IPR002035+370-575+|IPR010734+391-621+|IPR035892+81-215_84-195_226-352_228-340+|IPR036465+371-557+|IPR037768+225-332+|IPR045052+78-624+
|
SM00239+82-197_223-329+|SM00327+370-575+
|
PF00168+88-187_228-320+C2_domain|PF07002+391-621+Copine
|
G3DSA:2.60.40.150:FF:000042+223-352+Copine_3
|
PTHR10857+78-624+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
620-728
|
1.000
|
1-619
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
82230.750
|
6.655
|
1.500
|
28.709
|
10.165
|
48.901
|
51.099
|
14.973
|
13.736
|
48.764
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
904.798
|
3775.925
|
2202.044
|
862.816
|
237.894
|
151.304
|
200.507
|
1079.348
|
320.167
|
527.178
|
438.459
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.008
|
-2.267
|
-1.243
|
-1.891
|
-0.639
|
0.416
|
2.734
|
-2.288
|
— | — | — | — | — |
No JSON data available for plots.