SCN Proteipedia

Hg_chrom4_TN10mRNA_8311

Organism: Heterodera glycines Gene Locus: chr4:7270977-7276761 Feature type: polypeptide

Protein Sequence

Length: 984

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.969	1.3	0.647	0.491	1.236	1.668	0.52	1.524	1.084	1.222	0.862	1.554	0.988	1.309	1.182	1.161	0.883	0.801	0.078	0.717	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7814	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.753

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.373	0.201	0.008	0.692	0.126	0.398	0.197	0.063	0.259	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008866	1.000	1.000	Hsc_gene_942.t1	Hsc_gene_942.t1	—	Q23023.1 Serine/threonine-protein kinase unc-51 [Caenorhabditis elegans]	KAI1724689.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468\|GO:0010506	GO:0008150_0.928\|GO:0009987_0.905\|GO:0005575_0.883\|GO:0110165_0.875\|GO:0005622_0.770\|GO:0003674_0.729\|GO:0016020_0.707\|GO:0065007_0.702\|GO:0008152_0.701\|GO:0050789_0.698\|GO:0044237_0.697\|GO:0050794_0.685\|GO:0003824_0.669\|GO:0005737_0.669\|GO:0140096_0.669\|GO:0016740_0.641\|GO:0016772_0.620\|GO:0004672_0.612\|GO:0016301_0.612\|GO:0016773_0.612\|GO:0050896_0.610\|GO:0051716_0.566\|GO:0043226_0.561\|GO:0004674_0.555\|GO:0009056_0.536\|GO:0016043_0.529\|GO:0071840_0.529\|GO:0043229_0.513	IPR000719+30-295_33-295_34-295+\|IPR008271+150-162+\|IPR011009+33-383+\|IPR017441+36-64+\|IPR045269+22-491+\|IPR048941+892-962+	SM00220+33-295+	PF00069+34-295+Protein_kinase_domain\|PF21127+892-962+ATG1-like,_MIT_domain_2	G3DSA:1.10.510.10:FF:000493+111-299+serine/threonine-protein_kinase_unc-51_isoform_X2\|G3DSA:3.30.200.20:FF:000042+22-114+Aurora_kinase_A	PTHR24348+22-491+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	302-771	2.000	1-301;772-984	8p5l_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.802	110021.930	8.164	20.000	25.508	9.146	51.118	48.882	14.533	10.976	48.882

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1301.419	2603.133	1528.971	1079.229	995.429	1134.243	1446.418	1480.345	1586.503	653.416	1053.311

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.997	-1.407	-0.394	-0.148	0.203	0.362	—	—	—	—	—	—	—

No JSON data available for plots.

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