Hg_chrom4_TN10mRNA_8312
Organism: Heterodera glycines Gene Locus: chr4:7276791-7279360 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.257 | 0.614 | 0.233 | 1.689 | 2.599 | 0.483 | 0.676 | 1.351 | 1.37 | 1.536 | 0.397 | 1.126 | 0.26 | 0.965 | 1.255 | 1.108 | 1.024 | 0.0 | 0.199 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7815
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.493
|
0.419
|
0.015
|
0.520
|
0.221
|
0.361
|
0.263
|
0.027
|
0.055
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008867
|
1.000
|
1.000
|
Hsc_gene_941.t1
|
Hsc_gene_941.t1
|
— | — |
AKA58773.1 prefoldin-2 protein [Meloidogyne incognita];AKA58774.1 prefoldin-2 protein [Meloidogyne incognita]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006457|GO:0016272|GO:0051082
|
GO:0005575_0.949|GO:0110165_0.945|GO:0005622_0.925|GO:0005737_0.872|GO:0008150_0.602|GO:0043226_0.594|GO:0043229_0.591|GO:0016020_0.577|GO:0009987_0.574|GO:0043227_0.541|GO:0043231_0.519
|
IPR002777+16-120+|IPR009053+10-123+|IPR027235+1-126+
|
— |
PF01920+16-120+Prefoldin_subunit
|
— |
PTHR13303+1-126+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
16820.070
|
8.973
|
3.000
|
29.730
|
6.081
|
60.811
|
39.189
|
16.216
|
13.514
|
41.892
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
981.172
|
853.836
|
682.566
|
767.935
|
836.021
|
680.776
|
659.354
|
646.315
|
1093.497
|
1549.952
|
1354.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.553
|
-0.290
|
0.279
|
— |
-0.281
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.