Hg_chrom4_TN10mRNA_8317
Organism: Heterodera glycines Gene Locus: chr4:7289088-7290059 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.482 | 1.393 | 0.922 | 0.636 | 1.306 | 0.591 | 0.603 | 1.843 | 1.639 | 0.934 | 1.047 | 1.898 | 1.792 | 0.886 | 1.317 | 1.185 | 0.907 | 0.559 | 1.063 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7820
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
48-68
|
0.878
|
— | — | — | — |
0.000
|
— | — |
0.546
|
0.442
|
0.052
|
0.580
|
0.233
|
0.115
|
0.145
|
0.028
|
0.071
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002111
|
3.000
|
1.000
|
Hsc_gene_980.t1
|
— | — |
Q22942.2 Choline kinase A2 [Caenorhabditis elegans]
|
KAI1724605.1 choline/ethanolamine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.887|GO:0009987_0.784|GO:0003674_0.753|GO:0008152_0.735|GO:0044238_0.717|GO:0044237_0.713|GO:0009058_0.701|GO:0003824_0.648|GO:0044249_0.637|GO:0006793_0.625|GO:0006796_0.625|GO:0019637_0.619|GO:0006629_0.614|GO:0008610_0.612|GO:0090407_0.611|GO:0044255_0.610|GO:0006644_0.605|GO:0008654_0.604|GO:0016740_0.589|GO:0046486_0.568|GO:0006650_0.567|GO:0045017_0.562|GO:0046474_0.562|GO:0016772_0.556|GO:0005575_0.554|GO:0016301_0.551|GO:0016773_0.550|GO:0110165_0.543
|
IPR011009+6-200+
|
— |
PF01633+66-188+Choline/ethanolamine_kinase
|
— |
PTHR22603+75-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;212-217
|
1.000
|
9-211
|
5w6o_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
25221.690
|
7.802
|
5.000
|
29.954
|
14.747
|
52.074
|
47.926
|
17.051
|
12.903
|
44.240
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
97.858
|
36.527
|
80.894
|
105.869
|
214.408
|
159.100
|
284.341
|
90.165
|
8.412
|
57.580
|
36.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
1.398
|
0.499
|
0.987
|
-0.417
|
0.847
|
-0.928
|
1.800
|
— |
3.916
|
— | — | — |
No JSON data available for plots.