SCN Proteipedia

Hg_chrom4_TN10mRNA_8318

Organism: Heterodera glycines Gene Locus: chr4:7290509-7293113 Feature type: polypeptide

Protein Sequence

Length: 463

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.653	0.954	1.296	0.968	1.08	1.108	0.514	0.54	1.104	1.489	1.08	1.652	1.5	0.665	1.763	0.864	0.637	1.211	0.831	0.508	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7821	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.905

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	—	30-50	0.987	—	—	—	—	0.000	—	—	0.530	0.467	0.037	0.553	0.080	0.121	0.091	0.030	0.053	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000855	4.000	2.000	Hsc_gene_933.t1;Hsc_gene_933.t2	Hsc_gene_933.t1;Hsc_gene_933.t2	—	P34607.1 Exonuclease mut-7 [Caenorhabditis elegans]	KAI3414123.1 Pfam:DUF82 [Globodera pallida]	No	-0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0006139\|GO:0008408	GO:0008150_0.947\|GO:0005575_0.907\|GO:0110165_0.901\|GO:0009987_0.888\|GO:0005622_0.857\|GO:0065007_0.845\|GO:0050789_0.829\|GO:0016020_0.813\|GO:0050794_0.809\|GO:0050896_0.804\|GO:0043226_0.793\|GO:0008152_0.786\|GO:0005737_0.785\|GO:0043229_0.778\|GO:0032501_0.773\|GO:0044237_0.765\|GO:0009058_0.762\|GO:0043170_0.758\|GO:0044249_0.745\|GO:0009059_0.738\|GO:0043227_0.737\|GO:0048519_0.734\|GO:0010467_0.728\|GO:0019222_0.728\|GO:0031323_0.723\|GO:0048523_0.721\|GO:0042221_0.719\|GO:0043231_0.717\|GO:0060255_0.717\|GO:0009889_0.707\|GO:0031326_0.707\|GO:0010556_0.704\|GO:0010468_0.700\|GO:0003008_0.688\|GO:0009892_0.688\|GO:0010605_0.686\|GO:0031324_0.686\|GO:0009890_0.681\|GO:0031327_0.681\|GO:0010558_0.680\|GO:0010629_0.677\|GO:0007610_0.676\|GO:0050877_0.676\|GO:0010608_0.674\|GO:0007611_0.670\|GO:0007612_0.670\|GO:0007635_0.670\|GO:0008306_0.670\|GO:0008355_0.670\|GO:0016441_0.670\|GO:0031047_0.670\|GO:0035194_0.670\|GO:0042048_0.670\|GO:0050890_0.670\|GO:0043228_0.630\|GO:0043232_0.625\|GO:0005829_0.622\|GO:0005634_0.619\|GO:0099080_0.573\|GO:0048471_0.548\|GO:0035770_0.545\|GO:0036464_0.545\|GO:1990633_0.540	IPR002562+4-135+\|IPR002782+212-328+\|IPR012337+6-140+\|IPR036397+1-134+\|IPR052408+3-132+	—	PF01612+4-135+3'-5'_exonuclease\|PF01927+212-328+Mut7-C_RNAse_domain	—	PTHR47765+3-132+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-463	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.691	53387.880	8.764	12.500	30.454	9.287	48.812	51.188	16.847	13.607	45.356

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	blue	1234.208	335.414	366.833	310.309	313.117	241.332	297.703	218.031	53.677	4578.377	2639.220

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.250	—	—	-0.361	0.313	—	0.592	-6.525	—	-3.380	—	—

No JSON data available for plots.

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