Hg_chrom4_TN10mRNA_8320
Organism: Heterodera glycines Gene Locus: chr4:7295576-7296448 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 0.96 | 0.584 | 0.949 | 0.994 | 1.059 | 0.874 | 1.376 | 1.223 | 1.302 | 0.973 | 0.27 | 1.656 | 0.97 | 1.123 | 0.983 | 1.128 | 0.904 | 1.411 | 0.405 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7822
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.263
|
0.344
|
0.021
|
0.640
|
0.318
|
0.376
|
0.472
|
0.006
|
0.111
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003890
|
2.000
|
1.000
|
Hsc_gene_917.t1
|
Hsc_gene_913.t1;Hsc_gene_913.t2;Hsc_gene_917.t1
|
— |
Q6P3W7.1 SCY1-like protein 2 [Homo sapiens]
|
KAH7728206.1 other/SCY1 protein kinase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.792|GO:0110165_0.791|GO:0008150_0.777|GO:0005622_0.731|GO:0009987_0.715|GO:0003674_0.596|GO:0005737_0.575|GO:0016020_0.567|GO:0043226_0.531|GO:0043229_0.525|GO:0043227_0.502
|
IPR000719+35-218+|IPR011009+31-206+|IPR051177+36-207+
|
— | — | — |
PTHR12984+36-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
24177.750
|
9.013
|
9.000
|
23.853
|
11.927
|
45.872
|
54.128
|
14.679
|
9.174
|
50.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
203.931
|
529.099
|
213.333
|
165.207
|
143.507
|
148.515
|
131.041
|
161.123
|
36.246
|
305.579
|
190.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.540
|
-1.817
|
-0.261
|
-0.235
|
— | — | — | — |
-3.186
|
— | — | — | — |
No JSON data available for plots.