Hg_chrom4_TN10mRNA_8322
Organism: Heterodera glycines Gene Locus: chr4:7297887-7298222 Feature type: polypeptideProtein Sequence
Length: 55
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.268 | 0.331 | 1.881 | 0.0 | 0.466 | 0.216 | 0.909 | 1.212 | 1.474 | 1.377 | 3.209 | 1.01 | 0.699 | 1.484 | 1.818 | 0.298 | 0.551 | 4.196 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7824
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
— |
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.373
|
0.640
|
0.025
|
0.451
|
0.037
|
0.019
|
0.021
|
0.043
|
0.105
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000024
|
1.000
|
32.000
|
Hsc_gene_10347.t1;Hsc_gene_11837.t1;Hsc_gene_12331.t1;Hsc_gene_13534.t1;Hsc_gene_13644.t1;Hsc_gene_13644.t2;Hsc_gene_1373.t1;Hsc_gene_14017.t1;Hsc_gene_14815.t1;Hsc_gene_15816.t1;Hsc_gene_16121.t1;Hsc_gene_20671.t1;Hsc_gene_20883.t1;Hsc_gene_21397.t1;Hsc_gene_21397.t2;Hsc_gene_2226.t1;Hsc_gene_24677.t1;Hsc_gene_26531.t1;Hsc_gene_26561.t1;Hsc_gene_26696.t1;Hsc_gene_4143.t1;Hsc_gene_4478.t1;Hsc_gene_4571.t1;Hsc_gene_499.t1;Hsc_gene_5039.t1;Hsc_gene_5613.t1;Hsc_gene_6126.t1;Hsc_gene_6126.t2;Hsc_gene_915.t1;Hsc_gene_916.t1;Hsc_gene_916.t2;Hsc_gene_9746.t1
|
Hsc_gene_916.t1;Hsc_gene_916.t2
|
— | — | — |
HEV2210577
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-55
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
6422.680
|
10.739
|
8.500
|
20.000
|
14.545
|
41.818
|
58.182
|
18.182
|
1.818
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.