Hg_chrom4_TN10mRNA_8326
Organism: Heterodera glycines Gene Locus: chr4:7311135-7314626 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 0.969 | 1.033 | 0.914 | 1.515 | 1.263 | 0.406 | 1.136 | 1.178 | 1.51 | 0.861 | 1.114 | 1.105 | 0.473 | 1.005 | 1.028 | 0.807 | 0.574 | 1.166 | 1.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7828
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.060
|
— | — |
0.873
|
0.097
|
0.008
|
0.536
|
0.076
|
0.112
|
0.068
|
0.027
|
0.067
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008871
|
1.000
|
1.000
|
Hsc_gene_931.t1
|
Hsc_gene_931.t1;Hsc_gene_931.t2
|
— |
P16522.1 Anaphase-promoting complex subunit CDC23 [Saccharomyces cerevisiae S288C]
|
KAI1716233.1 cell division cycle protein 23 like protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005680
|
GO:0008150_0.900|GO:0005575_0.659|GO:0110165_0.654|GO:0009987_0.641|GO:0005622_0.596|GO:0016020_0.565|GO:0043226_0.528|GO:0043229_0.502
|
IPR007192+6-135+|IPR011990+1-217_49-287_220-444_223-388+|IPR019734+60-93_155-188_223-256_225-256_257-288_257-290_291-324_292-317_325-358_359-392_401-434+
|
SM00028+60-93_155-188_223-256_257-290_291-324_325-358_359-392_401-434+
|
PF04049+6-135+Anaphase_promoting_complex_subunit_8_/_Cdc23|PF13181+225-256_257-288_292-317+Tetratricopeptide_repeat
|
— |
PTHR12558+36-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
446-528
|
1.000
|
1-445
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
60738.690
|
4.853
|
-16.000
|
27.652
|
13.258
|
48.864
|
51.136
|
12.879
|
14.773
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1965.089
|
3713.558
|
2230.137
|
1632.059
|
1482.859
|
1318.710
|
1928.279
|
1947.310
|
2550.327
|
1339.679
|
1858.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.966
|
-1.323
|
-0.341
|
-0.171
|
-0.154
|
0.559
|
0.457
|
— | — | — | — | — | — |
No JSON data available for plots.