Hg_chrom4_TN10mRNA_8328
Organism: Heterodera glycines Gene Locus: chr4:7315770-7321527 Feature type: polypeptideProtein Sequence
Length: 1,182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.121 | 0.984 | 0.321 | 1.199 | 1.779 | 0.584 | 1.058 | 0.921 | 0.983 | 1.346 | 1.294 | 0.705 | 1.708 | 0.846 | 1.535 | 0.888 | 0.795 | 0.39 | 0.448 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7830
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKR,KRPMDLGTIERRLKN,RKQAREKEERKRLLK,KRLLKEEEERKKQQRERER,KQAREKEERKRLLKEEEERKKQQRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.868
|
0.048
|
0.006
|
0.346
|
0.075
|
0.062
|
0.056
|
0.002
|
0.085
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008872
|
1.000
|
1.000
|
Hsc_gene_930.t3
|
Hsc_gene_930.t1;Hsc_gene_930.t2;Hsc_gene_930.t3;Hsc_gene_930.t4
|
— |
Q6MGA9.1 Bromodomain-containing protein 2 [Rattus norvegicus]
|
KAI1724530.1 bromodomain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.951|GO:0009987_0.917|GO:0005575_0.869|GO:0110165_0.863|GO:0005622_0.837|GO:0065007_0.806|GO:0050789_0.797|GO:0043226_0.793|GO:0016020_0.787|GO:0043229_0.780|GO:0050794_0.777|GO:0043227_0.719|GO:0003674_0.702|GO:0005488_0.702|GO:0008152_0.696|GO:0019222_0.696|GO:0043231_0.695|GO:0043170_0.687|GO:0031323_0.681|GO:0044237_0.681|GO:0060255_0.677|GO:0009058_0.675|GO:0009059_0.675|GO:0044249_0.675|GO:0010467_0.673|GO:0005634_0.669|GO:0009889_0.654|GO:0031326_0.654|GO:0010556_0.652|GO:0010468_0.650|GO:0005515_0.646|GO:0048518_0.616|GO:0006139_0.615|GO:0044238_0.615|GO:0048522_0.610|GO:0090304_0.609|GO:0034654_0.606|GO:0141187_0.605|GO:0016070_0.604|GO:0032502_0.603|GO:0032774_0.601|GO:0080090_0.600|GO:0048856_0.565|GO:0016043_0.548|GO:0071840_0.548|GO:0043228_0.536|GO:0043232_0.536|GO:0006351_0.532|GO:0019219_0.515
|
IPR001487+119-229_131-210_138-210_141-154_157-173_173-191_343-453_350-438_362-434_415-434+|IPR018359+143-202_367-426+|IPR027353+726-807_735-797+|IPR031354+1148-1180+|IPR036427+104-235_115-242_327-456_335-456+|IPR038336+728-807+|IPR043509+347-448+|IPR050935+53-944+
|
SM00297+119-229_343-453+
|
PF00439+131-210_350-438+Bromodomain|PF17035+735-797+Bromodomain_extra-terminal_-_transcription_regulation|PF17105+1148-1180+C-terminal_domain_of_bromodomain_protein_4
|
G3DSA:1.20.1270.220:FF:000001+728-809+bromodomain-containing_protein_2_isoform_X1
|
PTHR22880+53-944+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-118;229-334;606-1182
|
2.000
|
119-228;335-605
|
6dne_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
130571.830
|
8.261
|
17.500
|
27.750
|
6.684
|
55.668
|
44.332
|
15.144
|
12.606
|
52.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2638.301
|
6384.326
|
3446.496
|
2576.103
|
2517.626
|
2228.080
|
2780.744
|
3174.304
|
1376.267
|
1844.985
|
1644.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.119
|
-1.446
|
-0.312
|
— |
-0.162
|
0.330
|
0.409
|
— | — | — | — | — | — |
No JSON data available for plots.