Hg_chrom4_TN10mRNA_8331
Organism: Heterodera glycines Gene Locus: chr4:7323966-7324971 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.918 | 0.957 | 0.454 | 3.07 | 0.675 | 0.548 | 0.987 | 0.731 | 0.889 | 1.296 | 1.161 | 1.096 | 0.633 | 1.208 | 1.504 | 0.539 | 1.096 | 0.0 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7832
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.647
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.631
|
0.111
|
0.039
|
0.467
|
0.152
|
0.070
|
0.086
|
0.173
|
0.080
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008873
|
1.000
|
1.000
|
Hsc_gene_928.t1
|
Hsc_gene_928.t1
|
— | — |
KAK6100890.1 Dynamitin family protein [Brugia pahangi]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005869|GO:0007017
|
GO:0005575_0.933|GO:0110165_0.929|GO:0005622_0.798|GO:0008150_0.777|GO:0009987_0.726|GO:0016020_0.644|GO:0051179_0.598|GO:0051641_0.598|GO:0051234_0.586|GO:0051649_0.581|GO:0043226_0.528|GO:0005737_0.520|GO:0043229_0.511|GO:0071840_0.511|GO:0016043_0.501
|
IPR028133+5-121_6-132+
|
— |
PF04912+6-132+Dynamitin
|
— |
PTHR15346+5-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-152
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
17255.030
|
4.421
|
-12.500
|
40.132
|
7.237
|
60.526
|
39.474
|
16.447
|
23.684
|
45.395
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1560.195
|
2236.727
|
1684.121
|
1037.297
|
1107.597
|
1207.543
|
1470.201
|
1583.405
|
2034.605
|
1427.315
|
1687.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.639
|
-1.246
|
-0.591
|
— | — |
0.296
|
— | — | — | — | — | — | — |
No JSON data available for plots.