Hg_chrom4_TN10mRNA_8332
Organism: Heterodera glycines Gene Locus: chr4:7326204-7327856 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.614 | 1.733 | 1.186 | 0.75 | 0.932 | 0.796 | 0.924 | 0.776 | 1.242 | 0.881 | 1.223 | 0.731 | 1.812 | 0.717 | 0.761 | 0.843 | 1.12 | 0.847 | 1.194 | 1.553 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7833
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.035
|
0.048
|
0.002
|
0.249
|
0.285
|
0.370
|
0.504
|
0.001
|
0.676
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008874
|
1.000
|
1.000
|
Hsc_gene_927.t1
|
Hsc_gene_927.t1
|
— |
Q9XUY5.1 Probable sodium/potassium-transporting ATPase subunit beta-3 [Caenorhabditis elegans]
|
KAI1716238.1 sodium / potassium ATPase beta chain domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005890|GO:0006813|GO:0006814
|
GO:0005575_0.853|GO:0110165_0.849|GO:0008150_0.783|GO:0016020_0.732|GO:0003674_0.706|GO:0071944_0.671|GO:0005886_0.650|GO:0009987_0.642|GO:0051179_0.566|GO:0006810_0.562|GO:0051234_0.562
|
IPR000402+25-316_25-319+|IPR038702+20-319+
|
— |
PF00287+25-316+Sodium_/_potassium_ATPase_beta_chain
|
— |
PTHR11523+25-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-322
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
36590.180
|
6.927
|
1.500
|
25.466
|
14.907
|
48.758
|
51.242
|
13.354
|
12.112
|
51.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
2720.773
|
1203.699
|
4300.258
|
2999.283
|
2684.002
|
4604.415
|
2650.267
|
5772.434
|
1662.982
|
1575.760
|
1613.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.609
|
1.180
|
-0.412
|
-0.192
|
0.793
|
-0.787
|
— |
-0.982
|
— | — | — | — | — |
No JSON data available for plots.