Hg_chrom4_TN10mRNA_8333
Organism: Heterodera glycines Gene Locus: chr4:7334697-7335827 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 0.946 | 0.951 | 1.804 | 0.872 | 0.894 | 0.692 | 0.581 | 1.034 | 0.943 | 1.057 | 1.026 | 3.23 | 0.671 | 0.831 | 0.914 | 1.525 | 0.705 | 0.447 | 0.513 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7834
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — |
0.753
|
0.351
|
0.000
|
— |
0.019
|
0.113
|
0.004
|
0.055
|
0.185
|
0.231
|
0.127
|
0.009
|
0.859
|
0.283
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008875
|
1.000
|
1.000
|
Hsc_gene_925.t1
|
Hsc_gene_925.t1
|
— | — |
PIO72223.1 B9 protein, partial [Teladorsagia circumcincta]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030431|GO:0032222|GO:1903818
|
— |
IPR031424+45-137+|IPR050975+41-166+
|
— |
PF17064+45-137+Quiver_family_u-PAR/Ly-6-like_domain
|
— |
PTHR33562+41-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
19339.180
|
7.446
|
2.000
|
22.674
|
15.116
|
45.930
|
54.070
|
12.209
|
10.465
|
51.744
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1987.947
|
779.458
|
2209.057
|
1874.052
|
1538.513
|
1811.942
|
1308.709
|
3049.200
|
791.265
|
3389.720
|
2276.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.274
|
1.128
|
-0.129
|
-0.317
|
0.251
|
-0.459
|
0.647
|
-1.077
|
-2.208
|
1.407
|
— | — | — |