Hg_chrom4_TN10mRNA_8334
Organism: Heterodera glycines Gene Locus: chr4:7337296-7339217 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 0.741 | 1.107 | 0.6 | 1.256 | 1.486 | 0.449 | 1.884 | 0.966 | 1.293 | 0.878 | 1.023 | 1.61 | 0.39 | 1.006 | 1.284 | 1.093 | 1.054 | 0.669 | 1.023 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7835
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.522
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.633
|
0.220
|
0.080
|
0.563
|
0.118
|
0.241
|
0.210
|
0.161
|
0.081
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008876
|
1.000
|
1.000
|
Hsc_gene_922.t1
|
Hsc_gene_922.t1;Hsc_gene_923.t1
|
— |
P46554.1 Leucine carboxyl methyltransferase 1 [Caenorhabditis elegans]
|
KAI1716248.1 leucine carboxyl methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0032259
|
GO:0005575_0.846|GO:0110165_0.840|GO:0008150_0.832|GO:0005622_0.802|GO:0009987_0.779|GO:0008152_0.689|GO:0005737_0.613|GO:0016020_0.565|GO:0003674_0.562|GO:0043226_0.538|GO:0065007_0.525|GO:0043229_0.518|GO:0050789_0.510
|
IPR007213+53-223+|IPR016651+1-341_23-338+|IPR029063+11-342_30-330+
|
— |
PF04072+53-223+Leucine_carboxyl_methyltransferase
|
G3DSA:3.40.50.150:FF:000092+21-336+Leucine_carboxyl_methyltransferase_1
|
PTHR13600+23-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
39440.470
|
6.047
|
-3.500
|
28.116
|
13.913
|
52.754
|
47.246
|
14.493
|
13.623
|
46.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1428.130
|
1406.635
|
1036.117
|
1001.832
|
992.066
|
876.126
|
1145.551
|
1290.914
|
806.952
|
2736.889
|
1909.773
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.671
|
-0.626
|
— | — | — |
0.397
|
0.455
|
— |
-1.888
|
— | — | — | — |
No JSON data available for plots.