Hg_chrom4_TN10mRNA_8339
Organism: Heterodera glycines Gene Locus: chr4:7353739-7357886 Feature type: polypeptideProtein Sequence
Length: 860
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.136 | 0.761 | 0.601 | 1.085 | 1.58 | 0.512 | 0.988 | 1.059 | 1.666 | 0.828 | 1.505 | 1.421 | 1.275 | 0.997 | 1.113 | 1.029 | 0.881 | 0.626 | 0.308 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7840
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.219
|
0.121
|
0.012
|
0.633
|
0.307
|
0.536
|
0.621
|
0.155
|
0.177
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003890
|
2.000
|
1.000
|
Hsc_gene_917.t1
|
Hsc_gene_913.t1;Hsc_gene_913.t2;Hsc_gene_917.t1
|
— |
Q8CFE4.1 SCY1-like protein 2 [Mus musculus]
|
KAI1716241.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.858|GO:0005575_0.825|GO:0110165_0.820|GO:0009987_0.811|GO:0005622_0.759|GO:0003674_0.637|GO:0043226_0.581|GO:0016020_0.577|GO:0043229_0.561
|
IPR000719+35-327_35-332_45-327+|IPR011009+31-329+|IPR011989+325-609+|IPR016024+345-578+|IPR051177+36-814+
|
SM00220+35-327+
|
PF00069+45-327+Protein_kinase_domain
|
— |
PTHR12984+36-814+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
618-860
|
1.000
|
1-617
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
96225.700
|
7.054
|
5.500
|
23.023
|
8.953
|
48.140
|
51.860
|
12.326
|
10.698
|
48.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
1063.048
|
1356.406
|
1004.535
|
823.276
|
844.251
|
811.989
|
1275.879
|
923.884
|
801.105
|
1409.923
|
1149.001
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.663
|
-0.857
|
-0.178
|
— | — |
0.662
|
— |
0.608
|
— | — | — | — | — |
No JSON data available for plots.