Hg_chrom4_TN10mRNA_8345
Organism: Heterodera glycines Gene Locus: chr4:7370894-7371913 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.722 | 1.242 | 0.428 | 1.346 | 0.159 | 0.665 | 1.863 | 1.38 | 1.343 | 1.318 | 1.827 | 0.863 | 0.836 | 0.887 | 0.887 | 0.916 | 1.035 | 1.911 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7845
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.572
|
0.522
|
0.007
|
0.691
|
0.114
|
0.063
|
0.084
|
0.071
|
0.037
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008883
|
1.000
|
1.000
|
Hsc_gene_908.t2
|
Hsc_gene_22572.t1;Hsc_gene_22572.t2;Hsc_gene_22572.t3;Hsc_gene_908.t1;Hsc_gene_908.t2
|
— |
Q7Z4H3.1 5'-deoxynucleotidase HDDC2 [Homo sapiens]
|
KAH7722652.1 Protein F45F2.9 b [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002953
|
GO:0005575_0.876|GO:0110165_0.867|GO:0005622_0.822|GO:0005737_0.822|GO:0016020_0.782|GO:0043226_0.766|GO:0043229_0.749|GO:0043227_0.722|GO:0043231_0.717
|
IPR003607+36-153+|IPR006674+18-141+|IPR039356+3-141+
|
SM00471+36-153+
|
PF13023+18-141+HD_domain
|
G3DSA:1.10.3210.10:FF:000035+7-145+HD_family_hydrolase
|
PTHR11845+3-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
4dmb_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
18134.880
|
6.492
|
0.000
|
31.677
|
11.180
|
47.205
|
52.795
|
16.770
|
14.907
|
47.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
1829.876
|
1212.293
|
1981.960
|
1889.720
|
1671.697
|
1537.685
|
1173.046
|
1867.034
|
1804.941
|
2401.962
|
2146.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.480
|
0.503
|
— |
-0.209
|
— |
-0.381
|
— |
-0.527
|
— | — | — | — | — |
No JSON data available for plots.