SCN Proteipedia

Hg_chrom4_TN10mRNA_8347

Organism: Heterodera glycines Gene Locus: chr4:7372058-7377564 Feature type: polypeptide

Protein Sequence

Length: 774

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.886	0.871	0.846	0.535	0.495	1.557	0.708	1.809	1.235	1.327	0.529	1.064	1.328	0.994	1.608	1.477	0.784	1.116	1.093	0.418	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7846	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	PKPS,KRRMPAAPHVPKKRSV,RKFLNAIHQFRRIKNKIR,RRHQRKFLNAIHQFRRIKN	—	—	23-89	0.997	—	—	0.000	—	—	0.084	0.129	0.027	0.106	0.254	0.317	0.220	0.009	0.675	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008885	1.000	1.000	Hsc_gene_907.t1	Hsc_gene_22571.t1;Hsc_gene_907.t1	—	Q11122.2 Small conductance calcium-activated potassium channel-like protein 3 [Caenorhabditis elegans]	KAI1716255.1 calcium-activated SK potassium channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005516\|GO:0006813\|GO:0015269\|GO:0016020\|GO:0016286	GO:0005575_0.862\|GO:0110165_0.862\|GO:0008150_0.860\|GO:0009987_0.831\|GO:0016020_0.828\|GO:0003674_0.817\|GO:0071944_0.778\|GO:0005886_0.770\|GO:0051179_0.761\|GO:0006810_0.754\|GO:0051234_0.754\|GO:0055085_0.675\|GO:0065007_0.659\|GO:0006811_0.652\|GO:0034220_0.649\|GO:0098660_0.625\|GO:0005215_0.623\|GO:0015267_0.623\|GO:0022803_0.623\|GO:0022857_0.623\|GO:0005216_0.622\|GO:0015075_0.622\|GO:0006812_0.617\|GO:0030001_0.617\|GO:0098655_0.613\|GO:0098662_0.608\|GO:0008324_0.593\|GO:0022836_0.593\|GO:0005261_0.592\|GO:0015318_0.590\|GO:0050789_0.581\|GO:0006813_0.578\|GO:0022890_0.578\|GO:0046873_0.578\|GO:0071805_0.576\|GO:0005267_0.556\|GO:0015079_0.556\|GO:0015276_0.544\|GO:0022834_0.544\|GO:0099094_0.523\|GO:0022839_0.514\|GO:0005622_0.513\|GO:0005227_0.511\|GO:0015269_0.511	IPR004178+603-668_603-676+\|IPR013099+508-587+\|IPR015449+272-753_301-415+\|IPR036122+586-669+	SM01053+603-676+	PF02888+603-668+Calmodulin_binding_domain\|PF03530+301-415+Calcium-activated_SK_potassium_channel\|PF07885+508-587+Ion_channel	—	PTHR10153+272-753+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-228;689-774	1.000	229-688	1g4y_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.883	86179.660	10.433	43.000	22.610	11.240	47.545	52.455	14.987	7.623	51.163

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	730.571	2044.924	1563.212	784.523	367.328	344.672	666.515	1161.116	598.092	148.072	340.937

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.617	-1.519	-0.885	-1.127	—	0.962	1.654	-0.661	—	—	—	—	—

No JSON data available for plots.

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