Hg_chrom4_TN10mRNA_8350
Organism: Heterodera glycines Gene Locus: chr4:7385386-7386443 Feature type: polypeptideProtein Sequence
Length: 220
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.163 | 0.744 | 0.784 | 1.591 | 0.699 | 0.866 | 1.364 | 1.414 | 1.106 | 0.62 | 0.802 | 1.136 | 0.699 | 1.484 | 1.234 | 0.969 | 1.309 | 0.0 | 0.802 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7849
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.682
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.795
|
0.237
|
0.034
|
0.441
|
0.164
|
0.132
|
0.094
|
0.090
|
0.059
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008888
|
1.000
|
1.000
|
Hsc_gene_904.t1
|
Hsc_gene_904.t1
|
— |
Q9DAA6.1 Exosome complex component CSL4 [Mus musculus]
|
KAH7728193.1 3'-5' exoribonuclease CSL4 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000178|GO:0003723|GO:0006396
|
GO:0005575_0.888|GO:0110165_0.876|GO:0005622_0.824|GO:0016020_0.783|GO:0005737_0.774|GO:0043226_0.765|GO:0043229_0.744|GO:0008150_0.731|GO:0043227_0.714|GO:0043231_0.703|GO:0009987_0.669|GO:0005634_0.615|GO:0008152_0.601|GO:0044238_0.581|GO:0044237_0.574|GO:0009058_0.570|GO:0043170_0.560|GO:0044249_0.553|GO:0006139_0.540|GO:0009059_0.540|GO:0010467_0.535|GO:0090304_0.519|GO:0009056_0.512|GO:0016070_0.512
|
IPR012340+84-218_91-212+|IPR019495+124-160+|IPR025721+28-64+|IPR039771+23-216+
|
— |
PF10447+124-160+Exosome_component_EXOSC1/CSL4|PF14382+28-64+Exosome_complex_exonuclease_RRP4_N-terminal_region
|
— |
PTHR12686+23-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-220
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
24493.680
|
5.955
|
-2.000
|
27.727
|
9.545
|
50.000
|
50.000
|
14.091
|
13.636
|
50.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1201.505
|
2219.161
|
1520.094
|
951.815
|
874.285
|
785.276
|
1094.910
|
1156.150
|
1110.317
|
1198.213
|
1160.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.774
|
-1.358
|
-0.568
|
-0.154
|
— |
0.489
|
0.452
|
— | — | — | — | — | — |
No JSON data available for plots.