SCN Proteipedia

Hg_chrom4_TN10mRNA_8351

Organism: Heterodera glycines Gene Locus: chr4:7386619-7392208 Feature type: polypeptide

Protein Sequence

Length: 883

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.856	0.948	1.133	0.391	1.567	1.365	0.701	1.019	1.384	1.117	0.961	1.532	1.133	0.61	1.109	0.841	0.891	1.133	0.784	0.766	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7850	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	LGEV,RRFEQNQRISFFKQNKK,KKRATNNMVTLEVKRRIKL,KRRIKLEGAELEAYLMKKR,RRIKLEGAELEAYLMKKRE	—	—	—	—	—	—	0.000	—	—	0.671	0.151	0.005	0.476	0.158	0.143	0.167	0.004	0.092	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008889	1.000	1.000	Hsc_gene_903.t1	Hsc_gene_903.t1	—	O17403.1 Probable cleavage and polyadenylation specificity factor subunit 2 [Caenorhabditis elegans]	KAF7638849.1 Cleavage and polyadenylation specificity factor subunit 2 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0005847\|GO:0006398	GO:0005575_0.827\|GO:0110165_0.816\|GO:0008150_0.793\|GO:0005622_0.755\|GO:0009987_0.746\|GO:0016020_0.745\|GO:0043226_0.692\|GO:0043229_0.680\|GO:0043227_0.639\|GO:0043231_0.625\|GO:0008152_0.619\|GO:0044237_0.600\|GO:0009058_0.586\|GO:0043170_0.582\|GO:0044249_0.570\|GO:0009059_0.553\|GO:0010467_0.543\|GO:0044238_0.543\|GO:0005634_0.521	IPR001279+17-221_22-191+\|IPR011108+582-632+\|IPR022712+241-366+\|IPR025069+661-880+\|IPR027075+1-883+\|IPR035639+7-202+\|IPR036866+4-652_6-259+	SM00849+17-221+\|SM01027+241-366+	PF07521+582-632+Zn-dependent_metallo-hydrolase_RNA_specificity_domain\|PF10996+241-366+Beta-Casp_domain\|PF13299+661-880+Cleavage_and_polyadenylation_factor_2_C-terminal\|PF16661+22-191+Metallo-beta-lactamase_superfamily_domain	G3DSA:3.60.15.10:FF:000008+6-254+Cleavage_and_polyadenylation_specificity_factor_subunit_2	PTHR45922+1-883+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	414-485;692-800	3.000	1-413;486-691;801-883	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.689	99828.140	4.899	-25.000	29.445	9.740	50.170	49.830	13.817	15.629	46.659

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	1694.134	1572.416	1189.254	1374.008	1536.649	1524.393	1491.842	1052.148	1127.473	2913.463	2148.039

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.633	-0.332	0.317	0.130	—	—	-0.639	0.646	—	—	—	—	—

No JSON data available for plots.

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