Hg_chrom4_TN10mRNA_8355
Organism: Heterodera glycines Gene Locus: chr4:7403166-7407927 Feature type: polypeptideProtein Sequence
Length: 1,049
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 1.286 | 0.728 | 0.657 | 1.144 | 1.271 | 0.738 | 1.764 | 0.657 | 1.262 | 0.491 | 1.178 | 1.033 | 1.082 | 1.517 | 1.621 | 0.797 | 0.679 | 0.587 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7854
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.148
|
0.022
|
0.635
|
0.157
|
0.308
|
0.214
|
0.064
|
0.369
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001882
|
2.000
|
2.000
|
Hsc_gene_901.t1;Hsc_gene_901.t2
|
Hsc_gene_901.t1;Hsc_gene_901.t2
|
— |
Q8MLZ5.2 Ras GTPase-activating protein gap-2 [Caenorhabditis elegans]
|
KAH7728190.1 CRE-GAP-2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043087
|
GO:0005575_0.901|GO:0008150_0.901|GO:0110165_0.892|GO:0009987_0.862|GO:0050789_0.832|GO:0065007_0.832|GO:0050794_0.820|GO:0005622_0.808|GO:0003674_0.770|GO:0050896_0.760|GO:0005488_0.751|GO:0051716_0.717|GO:0005515_0.702|GO:0007154_0.674|GO:0023052_0.673|GO:0007165_0.653|GO:0016020_0.584|GO:0048519_0.537|GO:0048523_0.520|GO:0005737_0.517
|
IPR000008+1-124_14-123_15-125+|IPR001936+144-493_195-389_219-389+|IPR008936+165-463_220-429+|IPR023152+345-359+|IPR035892+3-140_15-129+|IPR039360+3-913+
|
SM00239+14-123+|SM00323+144-493+
|
PF00168+15-125+C2_domain|PF00616+219-389+GTPase-activator_protein_for_Ras-like_GTPase
|
— |
PTHR10194+3-913+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
480-1049
|
1.000
|
1-479
|
3bxj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
115257.720
|
7.418
|
16.500
|
25.071
|
9.628
|
51.764
|
48.236
|
14.204
|
10.867
|
53.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2060.205
|
3800.538
|
2764.153
|
2580.786
|
2478.308
|
3063.603
|
2557.535
|
2924.175
|
394.392
|
1154.191
|
828.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.687
|
-0.696
|
— | — |
0.321
|
-0.250
|
— | — | — | — | — | — | — |
No JSON data available for plots.