Hg_chrom4_TN10mRNA_8356
Organism: Heterodera glycines Gene Locus: chr4:7408421-7409268 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 1.292 | 0.898 | 0.213 | 0.926 | 0.791 | 0.22 | 0.926 | 0.96 | 1.418 | 1.403 | 1.816 | 1.886 | 1.425 | 1.26 | 1.058 | 1.113 | 0.655 | 0.475 | 1.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7855
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKNQKLPFFTSFKIYKR
|
54-74
|
0.921
|
— | — | — | — |
0.000
|
— | — |
0.221
|
0.775
|
0.043
|
0.222
|
0.079
|
0.013
|
0.024
|
0.035
|
0.039
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008890
|
1.000
|
1.000
|
Hsc_gene_900.t1
|
Hsc_gene_900.t1
|
— |
P58064.3 Small ribosomal subunit protein bS6m [Mus musculus]
|
KAI1724497.1 ribosomal protein s6 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0019843
|
GO:0005575_0.912|GO:0110165_0.905|GO:0005622_0.877|GO:0043226_0.837|GO:0043229_0.830|GO:0016020_0.826|GO:0005737_0.802|GO:0043227_0.802|GO:0043231_0.789|GO:0005739_0.578
|
IPR000529+4-95+|IPR014717+1-130+|IPR035980+1-99+
|
— |
PF01250+4-95+Ribosomal_protein_S6
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-162
|
7pnw_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
19005.960
|
10.046
|
9.500
|
27.778
|
14.198
|
50.617
|
49.383
|
17.284
|
10.494
|
43.827
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
846.909
|
618.553
|
809.620
|
996.837
|
1056.410
|
896.754
|
787.675
|
898.538
|
575.855
|
999.189
|
817.760
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.159
|
0.552
|
0.408
|
— |
-0.222
|
-0.178
|
— | — | — | — | — | — | — |
No JSON data available for plots.