Hg_chrom4_TN10mRNA_8358
Organism: Heterodera glycines Gene Locus: chr4:7418208-7420860 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.003 | 0.963 | 0.135 | 0.523 | 1.357 | 1.074 | 1.275 | 1.002 | 1.537 | 0.624 | 2.191 | 1.035 | 0.415 | 1.361 | 1.232 | 0.996 | 1.367 | 0.754 | 0.75 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7856
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RKRRR
|
5-25
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.296
|
0.229
|
0.046
|
0.300
|
0.101
|
0.131
|
0.056
|
0.110
|
0.369
|
0.470
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008891
|
2.000
|
0.000
|
0.000
|
— | — |
Q09466.1 ABC transporter ATP-binding protein/permease wht-3 [Caenorhabditis elegans]
|
KAI1713968.1 ABC-2 type transporter domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0008150_0.887|GO:0005575_0.707|GO:0110165_0.702|GO:0009987_0.650|GO:0016020_0.598|GO:0050896_0.504
|
IPR003439+25-255_68-177_276-369+|IPR017871+151-165+|IPR027417+26-232_40-217_259-362_264-396+|IPR050352+257-375+
|
— |
PF00005+68-177_276-369+ABC_transporter
|
— |
PTHR48041+257-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-510
|
9ium_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
56223.560
|
10.024
|
18.500
|
21.765
|
9.804
|
46.078
|
53.922
|
13.333
|
8.431
|
51.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
257.413
|
36.747
|
115.008
|
280.484
|
598.366
|
322.264
|
1244.653
|
95.012
|
1.382
|
115.447
|
66.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.413
|
2.794
|
1.396
|
1.062
|
-0.879
|
1.961
|
-1.871
|
3.856
|
-6.590
|
7.999
|
— | — | — |
No JSON data available for plots.