Hg_chrom4_TN10mRNA_8360
Organism: Heterodera glycines Gene Locus: chr4:7423097-7426389 Feature type: polypeptideProtein Sequence
Length: 576
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.211 | 0.979 | 0.958 | 0.666 | 1.113 | 0.847 | 1.302 | 0.81 | 1.22 | 0.658 | 0.919 | 1.109 | 1.335 | 1.594 | 1.166 | 0.939 | 0.973 | 0.401 | 0.766 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7858
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRK,KRRR,RKHSYELAGRNRKLER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.608
|
0.123
|
0.011
|
0.581
|
0.044
|
0.089
|
0.034
|
0.013
|
0.153
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003892
|
2.000
|
1.000
|
Hsc_gene_3695.t1
|
Hsc_gene_3695.t1
|
— | — |
KAI1717737.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
MBI4899843
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
— |
IPR000198+303-480+|IPR002219+223-272_224-272_224-273+|IPR008936+284-478_294-393+|IPR046349+219-272+
|
SM00109+224-272+|SM00324+303-480+
|
PF00130+224-273+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)
|
— |
PTHR46199+219-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
49-151;491-576
|
2.000
|
1-48;152-490
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
63474.030
|
9.140
|
23.500
|
24.132
|
9.722
|
47.569
|
52.431
|
14.757
|
9.375
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
413.713
|
418.176
|
487.930
|
380.880
|
354.861
|
295.362
|
405.353
|
299.750
|
339.204
|
564.725
|
468.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.272
|
-0.249
|
— |
-0.249
|
0.466
|
— |
0.576
|
— | — | — | — | — |
No JSON data available for plots.