Hg_chrom4_TN10mRNA_8362
Organism: Heterodera glycines Gene Locus: chr4:7430430-7436153 Feature type: polypeptideProtein Sequence
Length: 1,298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 0.681 | 0.939 | 0.478 | 1.374 | 1.205 | 0.688 | 1.31 | 0.993 | 1.426 | 0.712 | 0.952 | 1.412 | 1.082 | 1.855 | 1.211 | 0.758 | 0.735 | 1.363 | 0.181 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7860
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KPRK,RRHLRHNAERWRRARD,RRPILSEQQLSKRKLI,RKRTGREMALSLRRHLR,RRHLEISNARQRIREKAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.136
|
0.043
|
0.514
|
0.132
|
0.159
|
0.212
|
0.045
|
0.170
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008892
|
1.000
|
1.000
|
Hsc_gene_898.t1
|
Hsc_gene_898.t1
|
— | — |
KAF7632953.1 CC2D2AN-C2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.926|GO:0005622_0.692|GO:0016020_0.674|GO:0043226_0.608|GO:0071944_0.598|GO:0005886_0.584|GO:0043227_0.554|GO:0008150_0.540
|
IPR028928+435-566+|IPR052434+426-520+
|
— |
PF15625+435-566+CC2D2A_N-terminal_C2_domain
|
— |
PTHR20837+426-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-183;642-686;807-867
|
3.000
|
184-641;687-806;868-1298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
146953.920
|
8.075
|
22.000
|
29.815
|
10.092
|
50.539
|
49.461
|
16.410
|
13.405
|
46.533
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1770.781
|
3369.418
|
4251.376
|
2312.341
|
1376.516
|
1267.193
|
957.606
|
2485.907
|
1251.022
|
801.265
|
994.018
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.105
|
-0.680
|
-0.769
|
-0.780
|
— |
-0.395
|
0.867
|
-1.234
|
— | — | — | — | — |
No JSON data available for plots.