Hg_chrom4_TN10mRNA_8365
Organism: Heterodera glycines Gene Locus: chr4:7441821-7444732 Feature type: polypeptideProtein Sequence
Length: 483
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.156 | 0.753 | 1.071 | 1.277 | 1.486 | 0.493 | 1.139 | 1.288 | 1.371 | 0.627 | 1.34 | 1.668 | 0.756 | 1.775 | 1.094 | 0.577 | 1.129 | 1.274 | 0.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7863
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
8-28
|
0.998
|
1-36
|
0.972
|
— | — |
0.002
|
— | — |
0.173
|
0.934
|
0.011
|
0.145
|
0.022
|
0.018
|
0.043
|
0.006
|
0.037
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008894
|
1.000
|
1.000
|
Hsc_gene_895.t1
|
Hsc_gene_895.t1
|
— |
Q8N3R3.2 T-cell activation inhibitor, mitochondrial [Homo sapiens]
|
KAH7728180.1 Protein C35B8.3 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.898|GO:0110165_0.887|GO:0005622_0.847|GO:0016020_0.812|GO:0043226_0.784|GO:0005737_0.779|GO:0043229_0.765|GO:0043227_0.744|GO:0043231_0.712|GO:0005739_0.559
|
IPR027986+27-479+|IPR027989+180-479+|IPR028031+24-113+
|
— |
PF14687+24-113+Domain_of_unknown_function_(DUF4460)|PF14688+180-479+Domain_of_unknown_function_(DUF4461)
|
— |
PTHR31596+27-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-483
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
55562.940
|
8.116
|
10.500
|
26.915
|
10.559
|
48.861
|
51.139
|
15.114
|
11.801
|
44.928
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1074.938
|
1763.885
|
1185.529
|
958.095
|
840.403
|
774.160
|
1102.792
|
1089.525
|
717.392
|
1271.913
|
1034.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.803
|
-1.018
|
-0.199
|
-0.221
|
— |
0.521
|
0.390
|
— | — | — | — | — | — |
No JSON data available for plots.