Hg_chrom4_TN10mRNA_8366
Organism: Heterodera glycines Gene Locus: chr4:7445305-7447313 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 1.316 | 0.686 | 0.716 | 0.723 | 0.726 | 0.764 | 0.377 | 1.3 | 1.402 | 0.515 | 2.553 | 1.415 | 0.835 | 1.502 | 1.051 | 1.114 | 1.001 | 0.726 | 1.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7864
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
AGPGARPMLRRAKSER
|
— | — |
21-56
|
0.935
|
— | — |
0.000
|
— | — |
0.078
|
0.079
|
0.022
|
0.114
|
0.324
|
0.155
|
0.103
|
0.024
|
0.861
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008895
|
1.000
|
1.000
|
Hsc_gene_894.t1
|
Hsc_gene_894.t1
|
— |
Q11082.2 Probable G-protein coupled receptor B0563.6 [Caenorhabditis elegans]
|
KAF7638835.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.887|GO:0009987_0.841|GO:0065007_0.766|GO:0050896_0.724|GO:0050789_0.719|GO:0005575_0.700|GO:0110165_0.697|GO:0050794_0.685|GO:0003674_0.682|GO:0051716_0.668|GO:0023052_0.645|GO:0007154_0.641|GO:0007165_0.618|GO:0016020_0.589|GO:0007186_0.570|GO:0071944_0.564|GO:0005488_0.556|GO:0005886_0.544|GO:0060089_0.509|GO:0038023_0.502
|
IPR000276+58-82_67-356_78-310_90-111_143-165_149-165_284-308+|IPR017452+73-341+|IPR053093+45-392+
|
SM01381+67-356+
|
PF00001+78-310+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR47760+45-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
440-530
|
1.000
|
1-439
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
59389.880
|
9.308
|
16.000
|
19.623
|
10.755
|
42.264
|
57.736
|
11.509
|
8.113
|
50.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
224.615
|
314.195
|
591.282
|
253.665
|
198.573
|
277.952
|
177.523
|
481.556
|
34.838
|
96.034
|
69.807
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
-0.446
|
-1.112
|
-0.384
|
0.498
|
-0.638
|
0.696
|
-1.302
|
— | — | — | — | — |
No JSON data available for plots.