Hg_chrom4_TN10mRNA_8367
Organism: Heterodera glycines Gene Locus: chr4:7447677-7449113 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 1.093 | 0.854 | 0.926 | 1.79 | 1.893 | 0.639 | 1.342 | 1.193 | 1.088 | 1.627 | 1.974 | 0.373 | 0.645 | 1.37 | 0.671 | 0.33 | 0.915 | 1.549 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7865
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.591
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.937
|
0.121
|
0.025
|
0.205
|
0.030
|
0.096
|
0.039
|
0.010
|
0.053
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008896
|
1.000
|
1.000
|
Hsc_gene_892.t3
|
Hsc_gene_892.t3
|
— |
Q5ZMV3.1 Protein Dr1 [Gallus gallus]
|
KAF7638836.1 CBFD_NFYB_HMF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000122|GO:0017054|GO:0046982|GO:0140223
|
GO:0005575_0.836|GO:0110165_0.833|GO:0005622_0.806|GO:0008150_0.794|GO:0043226_0.731|GO:0043229_0.718|GO:0009987_0.686|GO:0016020_0.673|GO:0043227_0.619|GO:0043231_0.605|GO:0065007_0.602|GO:0050789_0.595|GO:0050794_0.574|GO:0005634_0.515|GO:0008152_0.501
|
IPR003958+9-72+|IPR009072+1-138_7-130+|IPR042225+3-133+
|
— |
PF00808+9-72+Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone
|
— |
PTHR46138+3-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;140-149
|
1.000
|
21-139
|
1jfi_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
17227.770
|
8.501
|
5.000
|
35.570
|
7.383
|
54.362
|
45.638
|
20.134
|
15.436
|
40.268
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
376.305
|
304.712
|
595.721
|
379.495
|
319.231
|
332.384
|
393.680
|
326.691
|
816.494
|
39.499
|
372.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
0.179
|
-0.542
|
-0.282
|
— |
0.254
|
— |
0.411
|
4.373
|
— | — | — | — |
No JSON data available for plots.